miRNA display CGI


Results 81 - 100 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29079 5' -62.7 NC_006146.1 + 137225 0.66 0.669476
Target:  5'- aGGaaGCCGGGUGGGgGCcuggGGU-CCCGg -3'
miRNA:   3'- -CCgcCGGUCCACCUgCG----UCAcGGGCa -5'
29079 5' -62.7 NC_006146.1 + 78045 0.71 0.370631
Target:  5'- cGUGGCCgagaaaaggaugGGGUGGuuGUAGUGCUCGa -3'
miRNA:   3'- cCGCCGG------------UCCACCugCGUCACGGGCa -5'
29079 5' -62.7 NC_006146.1 + 116844 0.7 0.386244
Target:  5'- cGGCGGCCAGGUGGGCccugaccaccGCcgacauGGccGCCCu- -3'
miRNA:   3'- -CCGCCGGUCCACCUG----------CG------UCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 66708 0.71 0.348033
Target:  5'- uGCGGCCccguGG-GGGCGCAGacgGCCCu- -3'
miRNA:   3'- cCGCCGGu---CCaCCUGCGUCa--CGGGca -5'
29079 5' -62.7 NC_006146.1 + 122496 0.72 0.30585
Target:  5'- cGGCGGCgGGGUcgagagaauggaGGcCGCGGaGCCCGg -3'
miRNA:   3'- -CCGCCGgUCCA------------CCuGCGUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 126813 0.66 0.630673
Target:  5'- cGCGGCCcgAGGUGGAaccacccCAGU-CCCGg -3'
miRNA:   3'- cCGCCGG--UCCACCUgc-----GUCAcGGGCa -5'
29079 5' -62.7 NC_006146.1 + 83767 0.72 0.299212
Target:  5'- gGGUGGCCuGGUGGGagguCGCAGUcgacCCCGa -3'
miRNA:   3'- -CCGCCGGuCCACCU----GCGUCAc---GGGCa -5'
29079 5' -62.7 NC_006146.1 + 156843 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 76385 0.67 0.582236
Target:  5'- gGGCGcGCCGGGggagGGAC-CGGggGCgCCGa -3'
miRNA:   3'- -CCGC-CGGUCCa---CCUGcGUCa-CG-GGCa -5'
29079 5' -62.7 NC_006146.1 + 68792 0.67 0.595749
Target:  5'- --aGGCUGGGUGGAUGgCAGUGggaacacacauggaaCCCGg -3'
miRNA:   3'- ccgCCGGUCCACCUGC-GUCAC---------------GGGCa -5'
29079 5' -62.7 NC_006146.1 + 115121 0.67 0.601556
Target:  5'- cGCuGGCCAGcGUGGugGCcucgcUGCCCc- -3'
miRNA:   3'- cCG-CCGGUC-CACCugCGuc---ACGGGca -5'
29079 5' -62.7 NC_006146.1 + 114953 0.67 0.601556
Target:  5'- gGGCGGCgauggCGGGgGGcACGCAGcaGCCCa- -3'
miRNA:   3'- -CCGCCG-----GUCCaCC-UGCGUCa-CGGGca -5'
29079 5' -62.7 NC_006146.1 + 142878 0.66 0.61125
Target:  5'- gGGCcuGGCCGGGUcuaaGGugGCcugGCCUGg -3'
miRNA:   3'- -CCG--CCGGUCCA----CCugCGucaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 140130 0.74 0.238918
Target:  5'- gGGUGGCgGaGGUGGugGCgggGGUGCCCc- -3'
miRNA:   3'- -CCGCCGgU-CCACCugCG---UCACGGGca -5'
29079 5' -62.7 NC_006146.1 + 40005 0.73 0.27997
Target:  5'- aGUGGCCGGuGUGGGCGUAGcaggggGCCUGc -3'
miRNA:   3'- cCGCCGGUC-CACCUGCGUCa-----CGGGCa -5'
29079 5' -62.7 NC_006146.1 + 139129 0.67 0.601556
Target:  5'- uGGCuccgauGGCgCAGGUGGGgGCAGUGUUg-- -3'
miRNA:   3'- -CCG------CCG-GUCCACCUgCGUCACGGgca -5'
29079 5' -62.7 NC_006146.1 + 141454 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 144532 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 147610 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5'
29079 5' -62.7 NC_006146.1 + 153765 0.73 0.292687
Target:  5'- aGUGGCCAGGgaGGACGgAGgGCCUGg -3'
miRNA:   3'- cCGCCGGUCCa-CCUGCgUCaCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.