Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2908 | 5' | -54.8 | NC_001493.1 | + | 61331 | 0.66 | 0.922474 |
Target: 5'- aUCCgaggcagguUGGCCCGga-GUCC-CGCGACCc -3' miRNA: 3'- gAGG---------ACUGGGUuagCAGGcGCGUUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 71843 | 0.67 | 0.891678 |
Target: 5'- gCUCCgGGCCCAggugAUCGaucugUCGCGCAGa- -3' miRNA: 3'- -GAGGaCUGGGU----UAGCa----GGCGCGUUgg -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 72615 | 0.68 | 0.870404 |
Target: 5'- aCUCCUGACCCGGgau----CGCAGCCc -3' miRNA: 3'- -GAGGACUGGGUUagcaggcGCGUUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 76555 | 0.68 | 0.870404 |
Target: 5'- uUCCuUGACCCGGUucaCGagcUCCGCGCugAGCUu -3' miRNA: 3'- gAGG-ACUGGGUUA---GC---AGGCGCG--UUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 79128 | 0.69 | 0.822173 |
Target: 5'- gUCCUGGaCCAGcguguucgCGUCCGCGCAcgugauCCu -3' miRNA: 3'- gAGGACUgGGUUa-------GCAGGCGCGUu-----GG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 85248 | 0.66 | 0.933105 |
Target: 5'- gUCUUGAaaCGcgUGUCCGCcGUGGCCa -3' miRNA: 3'- gAGGACUggGUuaGCAGGCG-CGUUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 92767 | 0.69 | 0.804612 |
Target: 5'- cCUCUUGAuggcgcucaUgCAGUCGUCCGUGUA-CCg -3' miRNA: 3'- -GAGGACU---------GgGUUAGCAGGCGCGUuGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 96052 | 0.66 | 0.943225 |
Target: 5'- -aCCgccGGCCaccgguacguagacAUCGUCCGUGUGACCg -3' miRNA: 3'- gaGGa--CUGGgu------------UAGCAGGCGCGUUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 101298 | 0.69 | 0.804612 |
Target: 5'- cCUCCggaGuACCCccgcGAUCGUCUGUGCGcucuuGCCa -3' miRNA: 3'- -GAGGa--C-UGGG----UUAGCAGGCGCGU-----UGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 112651 | 0.66 | 0.942767 |
Target: 5'- -cCCUcACCCAGaaGUUCGCGUcgAGCCu -3' miRNA: 3'- gaGGAcUGGGUUagCAGGCGCG--UUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 126326 | 0.67 | 0.898312 |
Target: 5'- -aCCgcggagGACCCgGAUCGagCCGCGUggUCa -3' miRNA: 3'- gaGGa-----CUGGG-UUAGCa-GGCGCGuuGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 128699 | 0.67 | 0.904711 |
Target: 5'- uUCCacaUGACCC---UGUCCGCGaccgAACCg -3' miRNA: 3'- gAGG---ACUGGGuuaGCAGGCGCg---UUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 128808 | 0.72 | 0.678267 |
Target: 5'- uCUCUcguggggaaUGACCCGAaagUGUCCGUGCcguGCCa -3' miRNA: 3'- -GAGG---------ACUGGGUUa--GCAGGCGCGu--UGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 129122 | 0.72 | 0.66802 |
Target: 5'- -aCCgugGGCCCca-CGaCCGCGCGGCCg -3' miRNA: 3'- gaGGa--CUGGGuuaGCaGGCGCGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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