miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2908 5' -54.8 NC_001493.1 + 48087 0.74 0.525117
Target:  5'- aUCCUGGCCCuaucgGGUCGguaCCGCGUggagGGCCu -3'
miRNA:   3'- gAGGACUGGG-----UUAGCa--GGCGCG----UUGG- -5'
2908 5' -54.8 NC_001493.1 + 112651 0.66 0.942767
Target:  5'- -cCCUcACCCAGaaGUUCGCGUcgAGCCu -3'
miRNA:   3'- gaGGAcUGGGUUagCAGGCGCG--UUGG- -5'
2908 5' -54.8 NC_001493.1 + 61331 0.66 0.922474
Target:  5'- aUCCgaggcagguUGGCCCGga-GUCC-CGCGACCc -3'
miRNA:   3'- gAGG---------ACUGGGUuagCAGGcGCGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 44186 0.66 0.922474
Target:  5'- -aCC--GCCCAG-CGUaCGCGCGGCCu -3'
miRNA:   3'- gaGGacUGGGUUaGCAgGCGCGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 39340 0.66 0.916794
Target:  5'- ----cGACUCGAUcacgagcucCGUCCGCGCucuACCg -3'
miRNA:   3'- gaggaCUGGGUUA---------GCAGGCGCGu--UGG- -5'
2908 5' -54.8 NC_001493.1 + 28074 0.66 0.916794
Target:  5'- gUCU--ACCCAGUCGucucucguacUCCGCGagcaGACCg -3'
miRNA:   3'- gAGGacUGGGUUAGC----------AGGCGCg---UUGG- -5'
2908 5' -54.8 NC_001493.1 + 57401 0.67 0.891678
Target:  5'- gUCCgGGCCCuguGUCGUCaGCGC--CCu -3'
miRNA:   3'- gAGGaCUGGGu--UAGCAGgCGCGuuGG- -5'
2908 5' -54.8 NC_001493.1 + 71843 0.67 0.891678
Target:  5'- gCUCCgGGCCCAggugAUCGaucugUCGCGCAGa- -3'
miRNA:   3'- -GAGGaCUGGGU----UAGCa----GGCGCGUUgg -5'
2908 5' -54.8 NC_001493.1 + 29834 0.67 0.884812
Target:  5'- -cCCUGAgauCCgCGAUCGUCUucuCGUAGCCg -3'
miRNA:   3'- gaGGACU---GG-GUUAGCAGGc--GCGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 43445 0.68 0.87772
Target:  5'- gUCUgugGAUCUccggggGGUCGaUCUGCGCGGCCg -3'
miRNA:   3'- gAGGa--CUGGG------UUAGC-AGGCGCGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 79128 0.69 0.822173
Target:  5'- gUCCUGGaCCAGcguguucgCGUCCGCGCAcgugauCCu -3'
miRNA:   3'- gAGGACUgGGUUa-------GCAGGCGCGUu-----GG- -5'
2908 5' -54.8 NC_001493.1 + 54634 0.69 0.79559
Target:  5'- uUUCgGACUCGAUCGUggauagaaccgCCGCGCAAUg -3'
miRNA:   3'- gAGGaCUGGGUUAGCA-----------GGCGCGUUGg -5'
2908 5' -54.8 NC_001493.1 + 50391 0.69 0.79559
Target:  5'- -aCCggGACCCAGccacacgggcUCGUCCGCcCAAUCc -3'
miRNA:   3'- gaGGa-CUGGGUU----------AGCAGGCGcGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 49929 0.72 0.637134
Target:  5'- uUCCUGAUCCAGUCGgUgGCG-AACCc -3'
miRNA:   3'- gAGGACUGGGUUAGCaGgCGCgUUGG- -5'
2908 5' -54.8 NC_001493.1 + 39488 0.7 0.738625
Target:  5'- gCUCgUGAUCgAGUCGUCCGUGgucGCCc -3'
miRNA:   3'- -GAGgACUGGgUUAGCAGGCGCgu-UGG- -5'
2908 5' -54.8 NC_001493.1 + 13254 0.72 0.678267
Target:  5'- uCUCUcguggggaaUGACCCGAaagUGUCCGUGCcguGCCa -3'
miRNA:   3'- -GAGG---------ACUGGGUUa--GCAGGCGCGu--UGG- -5'
2908 5' -54.8 NC_001493.1 + 128808 0.72 0.678267
Target:  5'- uCUCUcguggggaaUGACCCGAaagUGUCCGUGCcguGCCa -3'
miRNA:   3'- -GAGG---------ACUGGGUUa--GCAGGCGCGu--UGG- -5'
2908 5' -54.8 NC_001493.1 + 13567 0.72 0.66802
Target:  5'- -aCCgugGGCCCca-CGaCCGCGCGGCCg -3'
miRNA:   3'- gaGGa--CUGGGuuaGCaGGCGCGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 129122 0.72 0.66802
Target:  5'- -aCCgugGGCCCca-CGaCCGCGCGGCCg -3'
miRNA:   3'- gaGGa--CUGGGuuaGCaGGCGCGUUGG- -5'
2908 5' -54.8 NC_001493.1 + 96052 0.66 0.943225
Target:  5'- -aCCgccGGCCaccgguacguagacAUCGUCCGUGUGACCg -3'
miRNA:   3'- gaGGa--CUGGgu------------UAGCAGGCGCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.