Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2908 | 5' | -54.8 | NC_001493.1 | + | 76555 | 0.68 | 0.870404 |
Target: 5'- uUCCuUGACCCGGUucaCGagcUCCGCGCugAGCUu -3' miRNA: 3'- gAGG-ACUGGGUUA---GC---AGGCGCG--UUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 79128 | 0.69 | 0.822173 |
Target: 5'- gUCCUGGaCCAGcguguucgCGUCCGCGCAcgugauCCu -3' miRNA: 3'- gAGGACUgGGUUa-------GCAGGCGCGUu-----GG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 92767 | 0.69 | 0.804612 |
Target: 5'- cCUCUUGAuggcgcucaUgCAGUCGUCCGUGUA-CCg -3' miRNA: 3'- -GAGGACU---------GgGUUAGCAGGCGCGUuGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 101298 | 0.69 | 0.804612 |
Target: 5'- cCUCCggaGuACCCccgcGAUCGUCUGUGCGcucuuGCCa -3' miRNA: 3'- -GAGGa--C-UGGG----UUAGCAGGCGCGU-----UGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 54634 | 0.69 | 0.79559 |
Target: 5'- uUUCgGACUCGAUCGUggauagaaccgCCGCGCAAUg -3' miRNA: 3'- gAGGaCUGGGUUAGCA-----------GGCGCGUUGg -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 50391 | 0.69 | 0.79559 |
Target: 5'- -aCCggGACCCAGccacacgggcUCGUCCGCcCAAUCc -3' miRNA: 3'- gaGGa-CUGGGUU----------AGCAGGCGcGUUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 39488 | 0.7 | 0.738625 |
Target: 5'- gCUCgUGAUCgAGUCGUCCGUGgucGCCc -3' miRNA: 3'- -GAGgACUGGgUUAGCAGGCGCgu-UGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 13254 | 0.72 | 0.678267 |
Target: 5'- uCUCUcguggggaaUGACCCGAaagUGUCCGUGCcguGCCa -3' miRNA: 3'- -GAGG---------ACUGGGUUa--GCAGGCGCGu--UGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 128808 | 0.72 | 0.678267 |
Target: 5'- uCUCUcguggggaaUGACCCGAaagUGUCCGUGCcguGCCa -3' miRNA: 3'- -GAGG---------ACUGGGUUa--GCAGGCGCGu--UGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 13567 | 0.72 | 0.66802 |
Target: 5'- -aCCgugGGCCCca-CGaCCGCGCGGCCg -3' miRNA: 3'- gaGGa--CUGGGuuaGCaGGCGCGUUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 129122 | 0.72 | 0.66802 |
Target: 5'- -aCCgugGGCCCca-CGaCCGCGCGGCCg -3' miRNA: 3'- gaGGa--CUGGGuuaGCaGGCGCGUUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 49929 | 0.72 | 0.637134 |
Target: 5'- uUCCUGAUCCAGUCGgUgGCG-AACCc -3' miRNA: 3'- gAGGACUGGGUUAGCaGgCGCgUUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 48087 | 0.74 | 0.525117 |
Target: 5'- aUCCUGGCCCuaucgGGUCGguaCCGCGUggagGGCCu -3' miRNA: 3'- gAGGACUGGG-----UUAGCa--GGCGCG----UUGG- -5' |
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2908 | 5' | -54.8 | NC_001493.1 | + | 36413 | 1.12 | 0.00244 |
Target: 5'- aCUCCUGACCCAAUCGUCCGCGCAACCc -3' miRNA: 3'- -GAGGACUGGGUUAGCAGGCGCGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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