miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29080 3' -53.8 NC_006146.1 + 73053 0.66 0.972406
Target:  5'- gGGGUCGGcGGCCcccuCCuCCAGGUCGu -3'
miRNA:   3'- -CUCAGCUaUUGGaau-GG-GGUCCGGCu -5'
29080 3' -53.8 NC_006146.1 + 4379 0.66 0.972406
Target:  5'- ---cCGcgGGCU---CCCCAGGCCGAc -3'
miRNA:   3'- cucaGCuaUUGGaauGGGGUCCGGCU- -5'
29080 3' -53.8 NC_006146.1 + 47203 0.66 0.972406
Target:  5'- ---cCGAgcGCCagGCCCCuGGCCGc -3'
miRNA:   3'- cucaGCUauUGGaaUGGGGuCCGGCu -5'
29080 3' -53.8 NC_006146.1 + 49229 0.66 0.969525
Target:  5'- cGGUCGAUGcCCUccUGCaCCUccggguccaGGGCCGGu -3'
miRNA:   3'- cUCAGCUAUuGGA--AUG-GGG---------UCCGGCU- -5'
29080 3' -53.8 NC_006146.1 + 158278 0.66 0.966754
Target:  5'- cGGGUCuaaGGUGGCCUggccugggcugugagGCCUCgaGGGCCGGg -3'
miRNA:   3'- -CUCAG---CUAUUGGAa--------------UGGGG--UCCGGCU- -5'
29080 3' -53.8 NC_006146.1 + 155199 0.66 0.966754
Target:  5'- cGGGUCuaaGGUGGCCUggccugggcugugagGCCUCgaGGGCCGGg -3'
miRNA:   3'- -CUCAG---CUAUUGGAa--------------UGGGG--UCCGGCU- -5'
29080 3' -53.8 NC_006146.1 + 152121 0.66 0.966754
Target:  5'- cGGGUCuaaGGUGGCCUggccugggcugugagGCCUCgaGGGCCGGg -3'
miRNA:   3'- -CUCAG---CUAUUGGAa--------------UGGGG--UCCGGCU- -5'
29080 3' -53.8 NC_006146.1 + 149043 0.66 0.966754
Target:  5'- cGGGUCuaaGGUGGCCUggccugggcugugagGCCUCgaGGGCCGGg -3'
miRNA:   3'- -CUCAG---CUAUUGGAa--------------UGGGG--UCCGGCU- -5'
29080 3' -53.8 NC_006146.1 + 145965 0.66 0.966754
Target:  5'- cGGGUCuaaGGUGGCCUggccugggcugugagGCCUCgaGGGCCGGg -3'
miRNA:   3'- -CUCAG---CUAUUGGAa--------------UGGGG--UCCGGCU- -5'
29080 3' -53.8 NC_006146.1 + 142887 0.66 0.966754
Target:  5'- cGGGUCuaaGGUGGCCUggccugggcugugagGCCUCgaGGGCCGGg -3'
miRNA:   3'- -CUCAG---CUAUUGGAa--------------UGGGG--UCCGGCU- -5'
29080 3' -53.8 NC_006146.1 + 125944 0.66 0.966436
Target:  5'- cGGUCGAgucccccggGGCCUccccgcGCCCCuGGCCa- -3'
miRNA:   3'- cUCAGCUa--------UUGGAa-----UGGGGuCCGGcu -5'
29080 3' -53.8 NC_006146.1 + 126628 0.66 0.966436
Target:  5'- uGGUCGGUGGgCacACCCCGgGGCCc- -3'
miRNA:   3'- cUCAGCUAUUgGaaUGGGGU-CCGGcu -5'
29080 3' -53.8 NC_006146.1 + 167638 0.66 0.963132
Target:  5'- cGGcUCG-UGGCCUgcgccguCCCCAGGCCc- -3'
miRNA:   3'- cUC-AGCuAUUGGAau-----GGGGUCCGGcu -5'
29080 3' -53.8 NC_006146.1 + 78830 0.66 0.963132
Target:  5'- cGGGcCGccccCCgcagcaGCCCCAGGCCGGg -3'
miRNA:   3'- -CUCaGCuauuGGaa----UGGGGUCCGGCU- -5'
29080 3' -53.8 NC_006146.1 + 33661 0.66 0.963132
Target:  5'- gGGGUgUGGUccCCgggACCCCAGGCCc- -3'
miRNA:   3'- -CUCA-GCUAuuGGaa-UGGGGUCCGGcu -5'
29080 3' -53.8 NC_006146.1 + 82031 0.66 0.959608
Target:  5'- gGAGUUGc-AGCCacaacaGCCCCAGGCCc- -3'
miRNA:   3'- -CUCAGCuaUUGGaa----UGGGGUCCGGcu -5'
29080 3' -53.8 NC_006146.1 + 47250 0.66 0.959608
Target:  5'- cGGGUCGAcgUGGCCccUGgCCCGGGUgaCGAg -3'
miRNA:   3'- -CUCAGCU--AUUGGa-AUgGGGUCCG--GCU- -5'
29080 3' -53.8 NC_006146.1 + 128861 0.66 0.959608
Target:  5'- aGGGUCGAgcucACCggcgugAgCCCGGGCCc- -3'
miRNA:   3'- -CUCAGCUau--UGGaa----UgGGGUCCGGcu -5'
29080 3' -53.8 NC_006146.1 + 111985 0.67 0.955858
Target:  5'- cGAGUUcAUGGCCUcGCCCUgcAGGUCGc -3'
miRNA:   3'- -CUCAGcUAUUGGAaUGGGG--UCCGGCu -5'
29080 3' -53.8 NC_006146.1 + 65909 0.67 0.955081
Target:  5'- aGAGUUGAgugucuccccagAGCCcccucgggaGCCCCAGGCCu- -3'
miRNA:   3'- -CUCAGCUa-----------UUGGaa-------UGGGGUCCGGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.