miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29080 5' -53 NC_006146.1 + 161459 0.66 0.987888
Target:  5'- --gCGUGgGGCGGGUaGGCUGg-UGCg -3'
miRNA:   3'- ggaGCAUgUCGCCCA-CCGAUagAUGg -5'
29080 5' -53 NC_006146.1 + 100279 0.66 0.986326
Target:  5'- gCCUCc--UAGCGGG-GGCUGgcagGCCu -3'
miRNA:   3'- -GGAGcauGUCGCCCaCCGAUaga-UGG- -5'
29080 5' -53 NC_006146.1 + 49790 0.66 0.986326
Target:  5'- gUCUCaGgagggGCAGgaagaUGGGUGGCUGUCgucgAUCg -3'
miRNA:   3'- -GGAG-Ca----UGUC-----GCCCACCGAUAGa---UGG- -5'
29080 5' -53 NC_006146.1 + 102388 0.66 0.986326
Target:  5'- uCCUCGgGgAGCuGGUGG-UAUCUGuCCc -3'
miRNA:   3'- -GGAGCaUgUCGcCCACCgAUAGAU-GG- -5'
29080 5' -53 NC_006146.1 + 141292 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 144370 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 147448 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 150526 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 153604 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 65287 0.66 0.984614
Target:  5'- --cCGUGCGGCuGuGGaccUGGCUGcgCUGCCu -3'
miRNA:   3'- ggaGCAUGUCG-C-CC---ACCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 41832 0.66 0.984614
Target:  5'- gCCggaUGU-C-GCGGG-GGCUGUCUGCg -3'
miRNA:   3'- -GGa--GCAuGuCGCCCaCCGAUAGAUGg -5'
29080 5' -53 NC_006146.1 + 149038 0.66 0.982743
Target:  5'- cCCUUGU---GgGGGUGGCUcggCUGCUc -3'
miRNA:   3'- -GGAGCAuguCgCCCACCGAua-GAUGG- -5'
29080 5' -53 NC_006146.1 + 12859 0.66 0.980706
Target:  5'- gCCUgGggcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug--UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 130140 0.66 0.978495
Target:  5'- cCCUCaGgcgggACAGgGGaGUGGCUAauaUCccgGCCg -3'
miRNA:   3'- -GGAG-Ca----UGUCgCC-CACCGAU---AGa--UGG- -5'
29080 5' -53 NC_006146.1 + 166128 0.66 0.978494
Target:  5'- aCUCGUACuGCucGGUGGCaaagGUggACCa -3'
miRNA:   3'- gGAGCAUGuCGc-CCACCGa---UAgaUGG- -5'
29080 5' -53 NC_006146.1 + 113821 0.66 0.978494
Target:  5'- -gUCGUACAGCaGGuUGGCcAUCcGCg -3'
miRNA:   3'- ggAGCAUGUCGcCC-ACCGaUAGaUGg -5'
29080 5' -53 NC_006146.1 + 165763 0.66 0.978494
Target:  5'- gUCUCGcAgGGCGGGUGaGCgAUCaAUCa -3'
miRNA:   3'- -GGAGCaUgUCGCCCAC-CGaUAGaUGG- -5'
29080 5' -53 NC_006146.1 + 41071 0.67 0.976101
Target:  5'- gCUCGgACGGgGGcGUGGCggGUggGCCg -3'
miRNA:   3'- gGAGCaUGUCgCC-CACCGa-UAgaUGG- -5'
29080 5' -53 NC_006146.1 + 33344 0.67 0.970739
Target:  5'- gCUCcgggGCAGcCGGGUGGCcgccgguggGUCcGCCg -3'
miRNA:   3'- gGAGca--UGUC-GCCCACCGa--------UAGaUGG- -5'
29080 5' -53 NC_006146.1 + 25171 0.67 0.970739
Target:  5'- gCCUgGgcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug-UCG-CCCACCGAUaga--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.