miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29080 5' -53 NC_006146.1 + 108545 1.13 0.003924
Target:  5'- uCCUCGUACAGCGGGUGGCUAUCUACCc -3'
miRNA:   3'- -GGAGCAUGUCGCCCACCGAUAGAUGG- -5'
29080 5' -53 NC_006146.1 + 39837 0.76 0.634901
Target:  5'- gCCUCGgccgcACAGUGGGccggcgggGGCUGUgUGCCc -3'
miRNA:   3'- -GGAGCa----UGUCGCCCa-------CCGAUAgAUGG- -5'
29080 5' -53 NC_006146.1 + 27335 0.74 0.724081
Target:  5'- cCCUCcaaaaACAGCGGGUGGCgcggcaagGCCg -3'
miRNA:   3'- -GGAGca---UGUCGCCCACCGauaga---UGG- -5'
29080 5' -53 NC_006146.1 + 89452 0.74 0.726059
Target:  5'- cCCggCGUGaAGCuGGUGGUUGUUUGCCa -3'
miRNA:   3'- -GGa-GCAUgUCGcCCACCGAUAGAUGG- -5'
29080 5' -53 NC_006146.1 + 136708 0.71 0.844364
Target:  5'- gCUCcgGCGGgGGGUGGCcggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua---GAUGG- -5'
29080 5' -53 NC_006146.1 + 115429 0.71 0.852335
Target:  5'- gCCUCGUucucGCccgcggccaucgAGCGGGUGGCcacgGUaCUGCUg -3'
miRNA:   3'- -GGAGCA----UG------------UCGCCCACCGa---UA-GAUGG- -5'
29080 5' -53 NC_006146.1 + 135314 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 136336 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 136243 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 136150 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 136057 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 135964 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 135871 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 135778 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 135686 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 135128 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 135500 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 135407 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 135221 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 135593 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.