miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29080 5' -53 NC_006146.1 + 136429 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 137172 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 137451 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 137358 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 136893 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 137265 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 136986 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 136800 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 137079 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 136615 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 137544 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 136522 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 60200 0.7 0.889067
Target:  5'- gCCUCGUccacaaACAGCaGGUGGaaUGUCUgGCCc -3'
miRNA:   3'- -GGAGCA------UGUCGcCCACCg-AUAGA-UGG- -5'
29080 5' -53 NC_006146.1 + 43361 0.69 0.919587
Target:  5'- gCC-CGUgGCAGgGGGUGGCUuagcgggggcagcAgcggCUGCCu -3'
miRNA:   3'- -GGaGCA-UGUCgCCCACCGA-------------Ua---GAUGG- -5'
29080 5' -53 NC_006146.1 + 62771 0.69 0.920151
Target:  5'- aCUC-UAcCAGCGuGUGGgUGUCUGCCc -3'
miRNA:   3'- gGAGcAU-GUCGCcCACCgAUAGAUGG- -5'
29080 5' -53 NC_006146.1 + 122948 0.69 0.925116
Target:  5'- aCCUUGUcgagccuguccacGCAGCGGGaGGCggggAggUGCCa -3'
miRNA:   3'- -GGAGCA-------------UGUCGCCCaCCGa---UagAUGG- -5'
29080 5' -53 NC_006146.1 + 13213 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5'
29080 5' -53 NC_006146.1 + 19369 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5'
29080 5' -53 NC_006146.1 + 22447 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5'
29080 5' -53 NC_006146.1 + 16291 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.