miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29080 5' -53 NC_006146.1 + 25171 0.67 0.970739
Target:  5'- gCCUgGgcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug-UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 33344 0.67 0.970739
Target:  5'- gCUCcgggGCAGcCGGGUGGCcgccgguggGUCcGCCg -3'
miRNA:   3'- gGAGca--UGUC-GCCCACCGa--------UAGaUGG- -5'
29080 5' -53 NC_006146.1 + 19015 0.67 0.970739
Target:  5'- gCCUgGgcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug-UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 22093 0.67 0.970739
Target:  5'- gCCUgGgcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug-UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 115123 0.67 0.970738
Target:  5'- --cUGgcCAGCGuGGUGGCcUcgCUGCCc -3'
miRNA:   3'- ggaGCauGUCGC-CCACCG-AuaGAUGG- -5'
29080 5' -53 NC_006146.1 + 73553 0.67 0.970738
Target:  5'- gCUCcccgGGCGGGUGGUUGUg-GCCg -3'
miRNA:   3'- gGAGcaugUCGCCCACCGAUAgaUGG- -5'
29080 5' -53 NC_006146.1 + 50221 0.67 0.967756
Target:  5'- gCC-CGUGCAcccGCGagauGGUGGCgguggCUGCCu -3'
miRNA:   3'- -GGaGCAUGU---CGC----CCACCGaua--GAUGG- -5'
29080 5' -53 NC_006146.1 + 33215 0.67 0.964564
Target:  5'- uCCUgGUgcuccgggGCAGcCGGGUGGCcgccggcggGUCcGCCg -3'
miRNA:   3'- -GGAgCA--------UGUC-GCCCACCGa--------UAGaUGG- -5'
29080 5' -53 NC_006146.1 + 44267 0.67 0.964564
Target:  5'- -----aACAGCGGGUaaagGGCUGcagagCUACCa -3'
miRNA:   3'- ggagcaUGUCGCCCA----CCGAUa----GAUGG- -5'
29080 5' -53 NC_006146.1 + 99181 0.68 0.957529
Target:  5'- gCUCGUAgAGCcaccaGGUGGC-GUCcGCCu -3'
miRNA:   3'- gGAGCAUgUCGc----CCACCGaUAGaUGG- -5'
29080 5' -53 NC_006146.1 + 69668 0.68 0.957154
Target:  5'- uCCUCcaGCuGGgGGGUGGCaUAUCUgaaggcuGCCa -3'
miRNA:   3'- -GGAGcaUG-UCgCCCACCG-AUAGA-------UGG- -5'
29080 5' -53 NC_006146.1 + 159343 0.68 0.956397
Target:  5'- gUCUCGUGCgccgccuccagcauGGCGGG-GGCguagCUgACCg -3'
miRNA:   3'- -GGAGCAUG--------------UCGCCCaCCGaua-GA-UGG- -5'
29080 5' -53 NC_006146.1 + 43198 0.68 0.953677
Target:  5'- uCCUCGcgggaGGCGGGgauggGGCg--CUGCUg -3'
miRNA:   3'- -GGAGCaug--UCGCCCa----CCGauaGAUGG- -5'
29080 5' -53 NC_006146.1 + 56843 0.68 0.953677
Target:  5'- gCCUCugGCGGCGGGggcggcagcuuUGGCUGgggCUGgCg -3'
miRNA:   3'- -GGAGcaUGUCGCCC-----------ACCGAUa--GAUgG- -5'
29080 5' -53 NC_006146.1 + 64437 0.68 0.949596
Target:  5'- gUCUCGgcgccgagACAGCcuuGGGUGGCgcUGUcCUGCUg -3'
miRNA:   3'- -GGAGCa-------UGUCG---CCCACCG--AUA-GAUGG- -5'
29080 5' -53 NC_006146.1 + 39806 0.68 0.945282
Target:  5'- aCUCGUAgguguggacUAGCGGG-GGgUAggCUACCc -3'
miRNA:   3'- gGAGCAU---------GUCGCCCaCCgAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 83176 0.69 0.940733
Target:  5'- gCCUUgauuucaagGUGCAGCagcugggagaGGGUGGCUAUggaGCCa -3'
miRNA:   3'- -GGAG---------CAUGUCG----------CCCACCGAUAga-UGG- -5'
29080 5' -53 NC_006146.1 + 28603 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5'
29080 5' -53 NC_006146.1 + 16291 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5'
29080 5' -53 NC_006146.1 + 19369 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.