miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29080 5' -53 NC_006146.1 + 12859 0.66 0.980706
Target:  5'- gCCUgGggcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug--UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 13213 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5'
29080 5' -53 NC_006146.1 + 15938 0.67 0.970739
Target:  5'- gCCUgGgcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug-UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 16291 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5'
29080 5' -53 NC_006146.1 + 19015 0.67 0.970739
Target:  5'- gCCUgGgcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug-UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 19369 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5'
29080 5' -53 NC_006146.1 + 22093 0.67 0.970739
Target:  5'- gCCUgGgcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug-UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 22447 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5'
29080 5' -53 NC_006146.1 + 25171 0.67 0.970739
Target:  5'- gCCUgGgcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug-UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 25525 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5'
29080 5' -53 NC_006146.1 + 27335 0.74 0.724081
Target:  5'- cCCUCcaaaaACAGCGGGUGGCgcggcaagGCCg -3'
miRNA:   3'- -GGAGca---UGUCGCCCACCGauaga---UGG- -5'
29080 5' -53 NC_006146.1 + 28249 0.67 0.970739
Target:  5'- gCCUgGgcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug-UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 28603 0.69 0.935946
Target:  5'- uCCUCGgguuCAGCcGcUGGCUGgcUCUGCCc -3'
miRNA:   3'- -GGAGCau--GUCGcCcACCGAU--AGAUGG- -5'
29080 5' -53 NC_006146.1 + 33215 0.67 0.964564
Target:  5'- uCCUgGUgcuccgggGCAGcCGGGUGGCcgccggcggGUCcGCCg -3'
miRNA:   3'- -GGAgCA--------UGUC-GCCCACCGa--------UAGaUGG- -5'
29080 5' -53 NC_006146.1 + 33344 0.67 0.970739
Target:  5'- gCUCcgggGCAGcCGGGUGGCcgccgguggGUCcGCCg -3'
miRNA:   3'- gGAGca--UGUC-GCCCACCGa--------UAGaUGG- -5'
29080 5' -53 NC_006146.1 + 39806 0.68 0.945282
Target:  5'- aCUCGUAgguguggacUAGCGGG-GGgUAggCUACCc -3'
miRNA:   3'- gGAGCAU---------GUCGCCCaCCgAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 39837 0.76 0.634901
Target:  5'- gCCUCGgccgcACAGUGGGccggcgggGGCUGUgUGCCc -3'
miRNA:   3'- -GGAGCa----UGUCGCCCa-------CCGAUAgAUGG- -5'
29080 5' -53 NC_006146.1 + 41071 0.67 0.976101
Target:  5'- gCUCGgACGGgGGcGUGGCggGUggGCCg -3'
miRNA:   3'- gGAGCaUGUCgCC-CACCGa-UAgaUGG- -5'
29080 5' -53 NC_006146.1 + 41832 0.66 0.984614
Target:  5'- gCCggaUGU-C-GCGGG-GGCUGUCUGCg -3'
miRNA:   3'- -GGa--GCAuGuCGCCCaCCGAUAGAUGg -5'
29080 5' -53 NC_006146.1 + 43198 0.68 0.953677
Target:  5'- uCCUCGcgggaGGCGGGgauggGGCg--CUGCUg -3'
miRNA:   3'- -GGAGCaug--UCGCCCa----CCGauaGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.