miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29080 5' -53 NC_006146.1 + 43361 0.69 0.919587
Target:  5'- gCC-CGUgGCAGgGGGUGGCUuagcgggggcagcAgcggCUGCCu -3'
miRNA:   3'- -GGaGCA-UGUCgCCCACCGA-------------Ua---GAUGG- -5'
29080 5' -53 NC_006146.1 + 44267 0.67 0.964564
Target:  5'- -----aACAGCGGGUaaagGGCUGcagagCUACCa -3'
miRNA:   3'- ggagcaUGUCGCCCA----CCGAUa----GAUGG- -5'
29080 5' -53 NC_006146.1 + 49790 0.66 0.986326
Target:  5'- gUCUCaGgagggGCAGgaagaUGGGUGGCUGUCgucgAUCg -3'
miRNA:   3'- -GGAG-Ca----UGUC-----GCCCACCGAUAGa---UGG- -5'
29080 5' -53 NC_006146.1 + 50221 0.67 0.967756
Target:  5'- gCC-CGUGCAcccGCGagauGGUGGCgguggCUGCCu -3'
miRNA:   3'- -GGaGCAUGU---CGC----CCACCGaua--GAUGG- -5'
29080 5' -53 NC_006146.1 + 56843 0.68 0.953677
Target:  5'- gCCUCugGCGGCGGGggcggcagcuuUGGCUGgggCUGgCg -3'
miRNA:   3'- -GGAGcaUGUCGCCC-----------ACCGAUa--GAUgG- -5'
29080 5' -53 NC_006146.1 + 60200 0.7 0.889067
Target:  5'- gCCUCGUccacaaACAGCaGGUGGaaUGUCUgGCCc -3'
miRNA:   3'- -GGAGCA------UGUCGcCCACCg-AUAGA-UGG- -5'
29080 5' -53 NC_006146.1 + 62771 0.69 0.920151
Target:  5'- aCUC-UAcCAGCGuGUGGgUGUCUGCCc -3'
miRNA:   3'- gGAGcAU-GUCGCcCACCgAUAGAUGG- -5'
29080 5' -53 NC_006146.1 + 64437 0.68 0.949596
Target:  5'- gUCUCGgcgccgagACAGCcuuGGGUGGCgcUGUcCUGCUg -3'
miRNA:   3'- -GGAGCa-------UGUCG---CCCACCG--AUA-GAUGG- -5'
29080 5' -53 NC_006146.1 + 65287 0.66 0.984614
Target:  5'- --cCGUGCGGCuGuGGaccUGGCUGcgCUGCCu -3'
miRNA:   3'- ggaGCAUGUCG-C-CC---ACCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 69668 0.68 0.957154
Target:  5'- uCCUCcaGCuGGgGGGUGGCaUAUCUgaaggcuGCCa -3'
miRNA:   3'- -GGAGcaUG-UCgCCCACCG-AUAGA-------UGG- -5'
29080 5' -53 NC_006146.1 + 73553 0.67 0.970738
Target:  5'- gCUCcccgGGCGGGUGGUUGUg-GCCg -3'
miRNA:   3'- gGAGcaugUCGCCCACCGAUAgaUGG- -5'
29080 5' -53 NC_006146.1 + 83176 0.69 0.940733
Target:  5'- gCCUUgauuucaagGUGCAGCagcugggagaGGGUGGCUAUggaGCCa -3'
miRNA:   3'- -GGAG---------CAUGUCG----------CCCACCGAUAga-UGG- -5'
29080 5' -53 NC_006146.1 + 89452 0.74 0.726059
Target:  5'- cCCggCGUGaAGCuGGUGGUUGUUUGCCa -3'
miRNA:   3'- -GGa-GCAUgUCGcCCACCGAUAGAUGG- -5'
29080 5' -53 NC_006146.1 + 99181 0.68 0.957529
Target:  5'- gCUCGUAgAGCcaccaGGUGGC-GUCcGCCu -3'
miRNA:   3'- gGAGCAUgUCGc----CCACCGaUAGaUGG- -5'
29080 5' -53 NC_006146.1 + 100279 0.66 0.986326
Target:  5'- gCCUCc--UAGCGGG-GGCUGgcagGCCu -3'
miRNA:   3'- -GGAGcauGUCGCCCaCCGAUaga-UGG- -5'
29080 5' -53 NC_006146.1 + 102388 0.66 0.986326
Target:  5'- uCCUCGgGgAGCuGGUGG-UAUCUGuCCc -3'
miRNA:   3'- -GGAGCaUgUCGcCCACCgAUAGAU-GG- -5'
29080 5' -53 NC_006146.1 + 108545 1.13 0.003924
Target:  5'- uCCUCGUACAGCGGGUGGCUAUCUACCc -3'
miRNA:   3'- -GGAGCAUGUCGCCCACCGAUAGAUGG- -5'
29080 5' -53 NC_006146.1 + 113821 0.66 0.978494
Target:  5'- -gUCGUACAGCaGGuUGGCcAUCcGCg -3'
miRNA:   3'- ggAGCAUGUCGcCC-ACCGaUAGaUGg -5'
29080 5' -53 NC_006146.1 + 115123 0.67 0.970738
Target:  5'- --cUGgcCAGCGuGGUGGCcUcgCUGCCc -3'
miRNA:   3'- ggaGCauGUCGC-CCACCG-AuaGAUGG- -5'
29080 5' -53 NC_006146.1 + 115429 0.71 0.852335
Target:  5'- gCCUCGUucucGCccgcggccaucgAGCGGGUGGCcacgGUaCUGCUg -3'
miRNA:   3'- -GGAGCA----UG------------UCGCCCACCGa---UA-GAUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.