miRNA display CGI


Results 61 - 79 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29080 5' -53 NC_006146.1 + 136800 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 136893 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 136986 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 137079 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 137172 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 137265 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 137358 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 137451 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 137544 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 141292 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 144370 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 147448 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 149038 0.66 0.982743
Target:  5'- cCCUUGU---GgGGGUGGCUcggCUGCUc -3'
miRNA:   3'- -GGAGCAuguCgCCCACCGAua-GAUGG- -5'
29080 5' -53 NC_006146.1 + 150526 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 153604 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 159343 0.68 0.956397
Target:  5'- gUCUCGUGCgccgccuccagcauGGCGGG-GGCguagCUgACCg -3'
miRNA:   3'- -GGAGCAUG--------------UCGCCCaCCGaua-GA-UGG- -5'
29080 5' -53 NC_006146.1 + 161459 0.66 0.987888
Target:  5'- --gCGUGgGGCGGGUaGGCUGg-UGCg -3'
miRNA:   3'- ggaGCAUgUCGCCCA-CCGAUagAUGg -5'
29080 5' -53 NC_006146.1 + 165763 0.66 0.978494
Target:  5'- gUCUCGcAgGGCGGGUGaGCgAUCaAUCa -3'
miRNA:   3'- -GGAGCaUgUCGCCCAC-CGaUAGaUGG- -5'
29080 5' -53 NC_006146.1 + 166128 0.66 0.978494
Target:  5'- aCUCGUACuGCucGGUGGCaaagGUggACCa -3'
miRNA:   3'- gGAGCAUGuCGc-CCACCGa---UAgaUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.