Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29080 | 5' | -53 | NC_006146.1 | + | 108545 | 1.13 | 0.003924 |
Target: 5'- uCCUCGUACAGCGGGUGGCUAUCUACCc -3' miRNA: 3'- -GGAGCAUGUCGCCCACCGAUAGAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 136522 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 136800 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 100279 | 0.66 | 0.986326 |
Target: 5'- gCCUCc--UAGCGGG-GGCUGgcagGCCu -3' miRNA: 3'- -GGAGcauGUCGCCCaCCGAUaga-UGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 135314 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 135407 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 135593 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 135686 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 135964 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 136429 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 136150 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 135871 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 136708 | 0.71 | 0.844364 |
Target: 5'- gCUCcgGCGGgGGGUGGCcggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua---GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 136243 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 135128 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 135778 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 136336 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 136615 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 135221 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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29080 | 5' | -53 | NC_006146.1 | + | 135500 | 0.71 | 0.875022 |
Target: 5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3' miRNA: 3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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