miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29080 5' -53 NC_006146.1 + 65287 0.66 0.984614
Target:  5'- --cCGUGCGGCuGuGGaccUGGCUGcgCUGCCu -3'
miRNA:   3'- ggaGCAUGUCG-C-CC---ACCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 56843 0.68 0.953677
Target:  5'- gCCUCugGCGGCGGGggcggcagcuuUGGCUGgggCUGgCg -3'
miRNA:   3'- -GGAGcaUGUCGCCC-----------ACCGAUa--GAUgG- -5'
29080 5' -53 NC_006146.1 + 19015 0.67 0.970739
Target:  5'- gCCUgGgcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug-UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 22093 0.67 0.970739
Target:  5'- gCCUgGgcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug-UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 135314 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 135221 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 135128 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 136708 0.71 0.844364
Target:  5'- gCUCcgGCGGgGGGUGGCcggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua---GAUGG- -5'
29080 5' -53 NC_006146.1 + 108545 1.13 0.003924
Target:  5'- uCCUCGUACAGCGGGUGGCUAUCUACCc -3'
miRNA:   3'- -GGAGCAUGUCGCCCACCGAUAGAUGG- -5'
29080 5' -53 NC_006146.1 + 136150 0.71 0.875022
Target:  5'- gCUCcgGCGGgGGGUGGCcgggccgCUGCCg -3'
miRNA:   3'- gGAGcaUGUCgCCCACCGaua----GAUGG- -5'
29080 5' -53 NC_006146.1 + 39806 0.68 0.945282
Target:  5'- aCUCGUAgguguggacUAGCGGG-GGgUAggCUACCc -3'
miRNA:   3'- gGAGCAU---------GUCGCCCaCCgAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 149038 0.66 0.982743
Target:  5'- cCCUUGU---GgGGGUGGCUcggCUGCUc -3'
miRNA:   3'- -GGAGCAuguCgCCCACCGAua-GAUGG- -5'
29080 5' -53 NC_006146.1 + 12859 0.66 0.980706
Target:  5'- gCCUgGggcgaGGCuGGGUGGCUGggcagGCCg -3'
miRNA:   3'- -GGAgCaug--UCG-CCCACCGAUaga--UGG- -5'
29080 5' -53 NC_006146.1 + 41071 0.67 0.976101
Target:  5'- gCUCGgACGGgGGcGUGGCggGUggGCCg -3'
miRNA:   3'- gGAGCaUGUCgCC-CACCGa-UAgaUGG- -5'
29080 5' -53 NC_006146.1 + 33344 0.67 0.970739
Target:  5'- gCUCcgggGCAGcCGGGUGGCcgccgguggGUCcGCCg -3'
miRNA:   3'- gGAGca--UGUC-GCCCACCGa--------UAGaUGG- -5'
29080 5' -53 NC_006146.1 + 113821 0.66 0.978494
Target:  5'- -gUCGUACAGCaGGuUGGCcAUCcGCg -3'
miRNA:   3'- ggAGCAUGUCGcCC-ACCGaUAGaUGg -5'
29080 5' -53 NC_006146.1 + 102388 0.66 0.986326
Target:  5'- uCCUCGgGgAGCuGGUGG-UAUCUGuCCc -3'
miRNA:   3'- -GGAGCaUgUCGcCCACCgAUAGAU-GG- -5'
29080 5' -53 NC_006146.1 + 115123 0.67 0.970738
Target:  5'- --cUGgcCAGCGuGGUGGCcUcgCUGCCc -3'
miRNA:   3'- ggaGCauGUCGC-CCACCG-AuaGAUGG- -5'
29080 5' -53 NC_006146.1 + 73553 0.67 0.970738
Target:  5'- gCUCcccgGGCGGGUGGUUGUg-GCCg -3'
miRNA:   3'- gGAGcaugUCGCCCACCGAUAgaUGG- -5'
29080 5' -53 NC_006146.1 + 50221 0.67 0.967756
Target:  5'- gCC-CGUGCAcccGCGagauGGUGGCgguggCUGCCu -3'
miRNA:   3'- -GGaGCAUGU---CGC----CCACCGaua--GAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.