miRNA display CGI


Results 61 - 79 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29080 5' -53 NC_006146.1 + 141292 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 144370 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 147448 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 150526 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 153604 0.66 0.986326
Target:  5'- gUUUGgggGCGGCuGGGggucgGGCUGgcCUGCCa -3'
miRNA:   3'- gGAGCa--UGUCG-CCCa----CCGAUa-GAUGG- -5'
29080 5' -53 NC_006146.1 + 113821 0.66 0.978494
Target:  5'- -gUCGUACAGCaGGuUGGCcAUCcGCg -3'
miRNA:   3'- ggAGCAUGUCGcCC-ACCGaUAGaUGg -5'
29080 5' -53 NC_006146.1 + 115123 0.67 0.970738
Target:  5'- --cUGgcCAGCGuGGUGGCcUcgCUGCCc -3'
miRNA:   3'- ggaGCauGUCGC-CCACCG-AuaGAUGG- -5'
29080 5' -53 NC_006146.1 + 39837 0.76 0.634901
Target:  5'- gCCUCGgccgcACAGUGGGccggcgggGGCUGUgUGCCc -3'
miRNA:   3'- -GGAGCa----UGUCGCCCa-------CCGAUAgAUGG- -5'
29080 5' -53 NC_006146.1 + 27335 0.74 0.724081
Target:  5'- cCCUCcaaaaACAGCGGGUGGCgcggcaagGCCg -3'
miRNA:   3'- -GGAGca---UGUCGCCCACCGauaga---UGG- -5'
29080 5' -53 NC_006146.1 + 89452 0.74 0.726059
Target:  5'- cCCggCGUGaAGCuGGUGGUUGUUUGCCa -3'
miRNA:   3'- -GGa-GCAUgUCGcCCACCGAUAGAUGG- -5'
29080 5' -53 NC_006146.1 + 115429 0.71 0.852335
Target:  5'- gCCUCGUucucGCccgcggccaucgAGCGGGUGGCcacgGUaCUGCUg -3'
miRNA:   3'- -GGAGCA----UG------------UCGCCCACCGa---UA-GAUGG- -5'
29080 5' -53 NC_006146.1 + 60200 0.7 0.889067
Target:  5'- gCCUCGUccacaaACAGCaGGUGGaaUGUCUgGCCc -3'
miRNA:   3'- -GGAGCA------UGUCGcCCACCg-AUAGA-UGG- -5'
29080 5' -53 NC_006146.1 + 83176 0.69 0.940733
Target:  5'- gCCUUgauuucaagGUGCAGCagcugggagaGGGUGGCUAUggaGCCa -3'
miRNA:   3'- -GGAG---------CAUGUCG----------CCCACCGAUAga-UGG- -5'
29080 5' -53 NC_006146.1 + 64437 0.68 0.949596
Target:  5'- gUCUCGgcgccgagACAGCcuuGGGUGGCgcUGUcCUGCUg -3'
miRNA:   3'- -GGAGCa-------UGUCG---CCCACCG--AUA-GAUGG- -5'
29080 5' -53 NC_006146.1 + 43198 0.68 0.953677
Target:  5'- uCCUCGcgggaGGCGGGgauggGGCg--CUGCUg -3'
miRNA:   3'- -GGAGCaug--UCGCCCa----CCGauaGAUGG- -5'
29080 5' -53 NC_006146.1 + 44267 0.67 0.964564
Target:  5'- -----aACAGCGGGUaaagGGCUGcagagCUACCa -3'
miRNA:   3'- ggagcaUGUCGCCCA----CCGAUa----GAUGG- -5'
29080 5' -53 NC_006146.1 + 50221 0.67 0.967756
Target:  5'- gCC-CGUGCAcccGCGagauGGUGGCgguggCUGCCu -3'
miRNA:   3'- -GGaGCAUGU---CGC----CCACCGaua--GAUGG- -5'
29080 5' -53 NC_006146.1 + 73553 0.67 0.970738
Target:  5'- gCUCcccgGGCGGGUGGUUGUg-GCCg -3'
miRNA:   3'- gGAGcaugUCGCCCACCGAUAgaUGG- -5'
29080 5' -53 NC_006146.1 + 161459 0.66 0.987888
Target:  5'- --gCGUGgGGCGGGUaGGCUGg-UGCg -3'
miRNA:   3'- ggaGCAUgUCGCCCA-CCGAUagAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.