miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29081 3' -57.4 NC_006146.1 + 87111 0.66 0.880184
Target:  5'- -cCAUGGuuuCAUuuaaGCaGGUGAGGGUGCCu -3'
miRNA:   3'- auGUGCCc--GUG----CGaCCACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 12347 0.66 0.880184
Target:  5'- --gACGGGaa-GCUGGaGAAGGaGCCc -3'
miRNA:   3'- augUGCCCgugCGACCaCUUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 65837 0.66 0.880184
Target:  5'- --gAUGGGC-CagUGGUGAuguGGUGCCg -3'
miRNA:   3'- augUGCCCGuGcgACCACUu--CCACGG- -5'
29081 3' -57.4 NC_006146.1 + 65507 0.66 0.880184
Target:  5'- ----gGGGCugGUUGGUGuGGG-GUCu -3'
miRNA:   3'- augugCCCGugCGACCACuUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 136598 0.66 0.873071
Target:  5'- --aGaaGGCGCGCUGGccGGGGUcGCCa -3'
miRNA:   3'- augUgcCCGUGCGACCacUUCCA-CGG- -5'
29081 3' -57.4 NC_006146.1 + 32768 0.66 0.873071
Target:  5'- --aGaaGGCGCGCUGGccGGGGUcGCCa -3'
miRNA:   3'- augUgcCCGUGCGACCacUUCCA-CGG- -5'
29081 3' -57.4 NC_006146.1 + 43271 0.66 0.873071
Target:  5'- gGCACaGGGCGgccUGgaGGUccGGcAGGUGCCu -3'
miRNA:   3'- aUGUG-CCCGU---GCgaCCA--CU-UCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 55689 0.66 0.873071
Target:  5'- aGCACGGGCACGgCcGccgccgGggGGcucUGCCc -3'
miRNA:   3'- aUGUGCCCGUGC-GaCca----CuuCC---ACGG- -5'
29081 3' -57.4 NC_006146.1 + 111891 0.66 0.865747
Target:  5'- ----gGGGCAgUGCUGGUGAgcAGG-GCUu -3'
miRNA:   3'- augugCCCGU-GCGACCACU--UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 46732 0.66 0.865003
Target:  5'- gAgGCGGGCggaggccACGCUGGccAGGGUccucGCCu -3'
miRNA:   3'- aUgUGCCCG-------UGCGACCacUUCCA----CGG- -5'
29081 3' -57.4 NC_006146.1 + 14776 0.66 0.858216
Target:  5'- gGCuCGGGCACcuGUUGGcggcUGAGGGgaaggagagGCCg -3'
miRNA:   3'- aUGuGCCCGUG--CGACC----ACUUCCa--------CGG- -5'
29081 3' -57.4 NC_006146.1 + 97248 0.66 0.858216
Target:  5'- gACACaagguGGCugGCUcGGUGuu-GUGCCa -3'
miRNA:   3'- aUGUGc----CCGugCGA-CCACuucCACGG- -5'
29081 3' -57.4 NC_006146.1 + 167756 0.66 0.858216
Target:  5'- gGCGCaggggccggguGGGCGCGCaUGGcucGAGacgcacGGUGCCg -3'
miRNA:   3'- aUGUG-----------CCCGUGCG-ACCa--CUU------CCACGG- -5'
29081 3' -57.4 NC_006146.1 + 53471 0.66 0.857452
Target:  5'- gGCGCGGGUgccuCGUcGGUcagggccGggGGUGCg -3'
miRNA:   3'- aUGUGCCCGu---GCGaCCA-------CuuCCACGg -5'
29081 3' -57.4 NC_006146.1 + 4513 0.66 0.850485
Target:  5'- --gGCGGGCcaGCGgggGGUGAccaucucGGUGCCg -3'
miRNA:   3'- augUGCCCG--UGCga-CCACUu------CCACGG- -5'
29081 3' -57.4 NC_006146.1 + 122967 0.66 0.850485
Target:  5'- cGCAgCGGG-AgGC-GG-GGAGGUGCCa -3'
miRNA:   3'- aUGU-GCCCgUgCGaCCaCUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 89004 0.66 0.850485
Target:  5'- cUGCugGGGCGCauuUUGGUGAccgAGcccaacguguGUGCCg -3'
miRNA:   3'- -AUGugCCCGUGc--GACCACU---UC----------CACGG- -5'
29081 3' -57.4 NC_006146.1 + 85561 0.66 0.850485
Target:  5'- cACACggucggGGGCACGUggGGUGGcAGGaggcaGCCg -3'
miRNA:   3'- aUGUG------CCCGUGCGa-CCACU-UCCa----CGG- -5'
29081 3' -57.4 NC_006146.1 + 139073 0.66 0.850485
Target:  5'- cAUACGGGC-C-CUGGUGGcgcGGGggGCUg -3'
miRNA:   3'- aUGUGCCCGuGcGACCACU---UCCa-CGG- -5'
29081 3' -57.4 NC_006146.1 + 50897 0.66 0.850485
Target:  5'- gGCGCGGGUGCGgcCUGGgccuccGUGCCc -3'
miRNA:   3'- aUGUGCCCGUGC--GACCacuuc-CACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.