Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 87111 | 0.66 | 0.880184 |
Target: 5'- -cCAUGGuuuCAUuuaaGCaGGUGAGGGUGCCu -3' miRNA: 3'- auGUGCCc--GUG----CGaCCACUUCCACGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 92279 | 0.66 | 0.84256 |
Target: 5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3' miRNA: 3'- auGugCCCGuGCGACcACuuCCa---CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 92219 | 0.66 | 0.84256 |
Target: 5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3' miRNA: 3'- auGugCCCGuGCGACcACuuCCa---CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 92189 | 0.66 | 0.84256 |
Target: 5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3' miRNA: 3'- auGugCCCGuGCGACcACuuCCa---CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 92159 | 0.66 | 0.84256 |
Target: 5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3' miRNA: 3'- auGugCCCGuGCGACcACuuCCa---CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 92129 | 0.66 | 0.84256 |
Target: 5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3' miRNA: 3'- auGugCCCGuGCGACcACuuCCa---CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 92099 | 0.66 | 0.84256 |
Target: 5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3' miRNA: 3'- auGugCCCGuGCGACcACuuCCa---CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 92040 | 0.66 | 0.84256 |
Target: 5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3' miRNA: 3'- auGugCCCGuGCGACcACuuCCa---CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 92010 | 0.66 | 0.84256 |
Target: 5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3' miRNA: 3'- auGugCCCGuGCGACcACuuCCa---CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 92309 | 0.66 | 0.84256 |
Target: 5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3' miRNA: 3'- auGugCCCGuGCGACcACuuCCa---CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 33237 | 0.66 | 0.845753 |
Target: 5'- gGCugGGGUucCGggGGUGggGGcuccacgaacccgcuUGCCu -3' miRNA: 3'- aUGugCCCGu-GCgaCCACuuCC---------------ACGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 139073 | 0.66 | 0.850485 |
Target: 5'- cAUACGGGC-C-CUGGUGGcgcGGGggGCUg -3' miRNA: 3'- aUGUGCCCGuGcGACCACU---UCCa-CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 12347 | 0.66 | 0.880184 |
Target: 5'- --gACGGGaa-GCUGGaGAAGGaGCCc -3' miRNA: 3'- augUGCCCgugCGACCaCUUCCaCGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 136598 | 0.66 | 0.873071 |
Target: 5'- --aGaaGGCGCGCUGGccGGGGUcGCCa -3' miRNA: 3'- augUgcCCGUGCGACCacUUCCA-CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 32768 | 0.66 | 0.873071 |
Target: 5'- --aGaaGGCGCGCUGGccGGGGUcGCCa -3' miRNA: 3'- augUgcCCGUGCGACCacUUCCA-CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 43271 | 0.66 | 0.873071 |
Target: 5'- gGCACaGGGCGgccUGgaGGUccGGcAGGUGCCu -3' miRNA: 3'- aUGUG-CCCGU---GCgaCCA--CU-UCCACGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 167756 | 0.66 | 0.858216 |
Target: 5'- gGCGCaggggccggguGGGCGCGCaUGGcucGAGacgcacGGUGCCg -3' miRNA: 3'- aUGUG-----------CCCGUGCG-ACCa--CUU------CCACGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 97248 | 0.66 | 0.858216 |
Target: 5'- gACACaagguGGCugGCUcGGUGuu-GUGCCa -3' miRNA: 3'- aUGUGc----CCGugCGA-CCACuucCACGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 14776 | 0.66 | 0.858216 |
Target: 5'- gGCuCGGGCACcuGUUGGcggcUGAGGGgaaggagagGCCg -3' miRNA: 3'- aUGuGCCCGUG--CGACC----ACUUCCa--------CGG- -5' |
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29081 | 3' | -57.4 | NC_006146.1 | + | 50897 | 0.66 | 0.850485 |
Target: 5'- gGCGCGGGUGCGgcCUGGgccuccGUGCCc -3' miRNA: 3'- aUGUGCCCGUGC--GACCacuuc-CACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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