miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29081 3' -57.4 NC_006146.1 + 14776 0.66 0.858216
Target:  5'- gGCuCGGGCACcuGUUGGcggcUGAGGGgaaggagagGCCg -3'
miRNA:   3'- aUGuGCCCGUG--CGACC----ACUUCCa--------CGG- -5'
29081 3' -57.4 NC_006146.1 + 50897 0.66 0.850485
Target:  5'- gGCGCGGGUGCGgcCUGGgccuccGUGCCc -3'
miRNA:   3'- aUGUGCCCGUGC--GACCacuuc-CACGG- -5'
29081 3' -57.4 NC_006146.1 + 136598 0.66 0.873071
Target:  5'- --aGaaGGCGCGCUGGccGGGGUcGCCa -3'
miRNA:   3'- augUgcCCGUGCGACCacUUCCA-CGG- -5'
29081 3' -57.4 NC_006146.1 + 12347 0.66 0.880184
Target:  5'- --gACGGGaa-GCUGGaGAAGGaGCCc -3'
miRNA:   3'- augUGCCCgugCGACCaCUUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 87111 0.66 0.880184
Target:  5'- -cCAUGGuuuCAUuuaaGCaGGUGAGGGUGCCu -3'
miRNA:   3'- auGUGCCc--GUG----CGaCCACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 92219 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 92279 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 92309 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 32768 0.66 0.873071
Target:  5'- --aGaaGGCGCGCUGGccGGGGUcGCCa -3'
miRNA:   3'- augUgcCCGUGCGACCacUUCCA-CGG- -5'
29081 3' -57.4 NC_006146.1 + 33237 0.66 0.845753
Target:  5'- gGCugGGGUucCGggGGUGggGGcuccacgaacccgcuUGCCu -3'
miRNA:   3'- aUGugCCCGu-GCgaCCACuuCC---------------ACGG- -5'
29081 3' -57.4 NC_006146.1 + 139073 0.66 0.850485
Target:  5'- cAUACGGGC-C-CUGGUGGcgcGGGggGCUg -3'
miRNA:   3'- aUGUGCCCGuGcGACCACU---UCCa-CGG- -5'
29081 3' -57.4 NC_006146.1 + 76378 0.67 0.834448
Target:  5'- cACGagaGGGCGCGCcGGgGGAGGgaccgggggcGCCg -3'
miRNA:   3'- aUGUg--CCCGUGCGaCCaCUUCCa---------CGG- -5'
29081 3' -57.4 NC_006146.1 + 166984 0.67 0.825316
Target:  5'- gACG-GGGCAgugGCUGGgcgcgguUGAAGGUGCa -3'
miRNA:   3'- aUGUgCCCGUg--CGACC-------ACUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 146466 0.67 0.834448
Target:  5'- cACGCGGGCGCaGCacccauUGGuUGcAGGcgGCCu -3'
miRNA:   3'- aUGUGCCCGUG-CG------ACC-ACuUCCa-CGG- -5'
29081 3' -57.4 NC_006146.1 + 156228 0.67 0.826155
Target:  5'- gACGCGGGCccccucgGCcgUGGacGGGGUGCCg -3'
miRNA:   3'- aUGUGCCCGug-----CG--ACCacUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 89819 0.67 0.817688
Target:  5'- gGCGgGGGCGUGgaGGUGGAGGaGUa -3'
miRNA:   3'- aUGUgCCCGUGCgaCCACUUCCaCGg -5'
29081 3' -57.4 NC_006146.1 + 167867 0.67 0.800268
Target:  5'- -gUAgGGGCACGgaGGUGcgguGAGGUuGCUc -3'
miRNA:   3'- auGUgCCCGUGCgaCCAC----UUCCA-CGG- -5'
29081 3' -57.4 NC_006146.1 + 92070 0.67 0.809057
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcgGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa--CGG- -5'
29081 3' -57.4 NC_006146.1 + 77915 0.67 0.826155
Target:  5'- cGCAgGGGCGgGC-GGccucGcAGGUGCCg -3'
miRNA:   3'- aUGUgCCCGUgCGaCCa---CuUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 94995 0.67 0.834448
Target:  5'- gGCAUgggGGGCA-GCUGa-GGAGGUGCUg -3'
miRNA:   3'- aUGUG---CCCGUgCGACcaCUUCCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.