Results 21 - 40 of 84 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 33255 | 0.7 | 0.63517 |
Target: 5'- cGC-CGGGC-CGCUgccccgcuccgGGUGggGGgugGCCc -3' miRNA: 3'- aUGuGCCCGuGCGA-----------CCACuuCCa--CGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 33131 | 0.7 | 0.63517 |
Target: 5'- cGC-CGGGC-CGCUgccccgcuccgGGUGggGGgugGCCc -3' miRNA: 3'- aUGuGCCCGuGCGA-----------CCACuuCCa--CGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 32970 | 0.69 | 0.715493 |
Target: 5'- aACG-GGGCGCGCUGGgucgcGGcUGCCc -3' miRNA: 3'- aUGUgCCCGUGCGACCacuu-CC-ACGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 64121 | 0.69 | 0.714507 |
Target: 5'- gGCACGGGUggaggacACGCUGGUcuuGAauucagucAGG-GCCu -3' miRNA: 3'- aUGUGCCCG-------UGCGACCA---CU--------UCCaCGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 136801 | 0.69 | 0.715493 |
Target: 5'- aACG-GGGCGCGCUGGgucgcGGcUGCCc -3' miRNA: 3'- aUGUgCCCGUGCGACCacuu-CC-ACGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 44751 | 0.69 | 0.725311 |
Target: 5'- gGCuccaauCGGGCucuCGggGGaGAGGGUGCCg -3' miRNA: 3'- aUGu-----GCCCGu--GCgaCCaCUUCCACGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 56644 | 0.69 | 0.695657 |
Target: 5'- -uCugGGGCACcacuacgaGCUGGcccucccuGAGGUGCCg -3' miRNA: 3'- auGugCCCGUG--------CGACCac------UUCCACGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 115056 | 0.69 | 0.725311 |
Target: 5'- cUGCACcucGGUguuGCUGGUGGccGGGUGCCc -3' miRNA: 3'- -AUGUGc--CCGug-CGACCACU--UCCACGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 91103 | 0.69 | 0.705605 |
Target: 5'- gGCAguGGCA-GCggagggaGGUGAGGGUGCCg -3' miRNA: 3'- aUGUgcCCGUgCGa------CCACUUCCACGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 155700 | 0.69 | 0.725311 |
Target: 5'- gUACuGCGGGUuCGa-GGUGAAGGcgGCCg -3' miRNA: 3'- -AUG-UGCCCGuGCgaCCACUUCCa-CGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 77963 | 0.69 | 0.715493 |
Target: 5'- gGC-CGGaGC-CGgUGGccuUGGAGGUGCCg -3' miRNA: 3'- aUGuGCC-CGuGCgACC---ACUUCCACGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 169316 | 0.68 | 0.738921 |
Target: 5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3' miRNA: 3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 167452 | 0.68 | 0.738921 |
Target: 5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3' miRNA: 3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 113668 | 0.68 | 0.73505 |
Target: 5'- -cCACGGGCcCGUggaccaccgUGGUGAucuuauucagguAGGUGCUc -3' miRNA: 3'- auGUGCCCGuGCG---------ACCACU------------UCCACGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 137376 | 0.68 | 0.776739 |
Target: 5'- aGC-CGGGCACaaccuagggagggagGCcGG-GAGGGUGCUg -3' miRNA: 3'- aUGuGCCCGUG---------------CGaCCaCUUCCACGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 65468 | 0.68 | 0.782251 |
Target: 5'- cACGCuGGCGgGCU-GUGcGGGUGCUg -3' miRNA: 3'- aUGUGcCCGUgCGAcCACuUCCACGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 85660 | 0.68 | 0.782251 |
Target: 5'- -cCACGGGgACcCUGGUGGaugaaAGG-GCCu -3' miRNA: 3'- auGUGCCCgUGcGACCACU-----UCCaCGG- -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 170247 | 0.68 | 0.738921 |
Target: 5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3' miRNA: 3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 168384 | 0.68 | 0.738921 |
Target: 5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3' miRNA: 3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5' |
|||||||
29081 | 3' | -57.4 | NC_006146.1 | + | 167867 | 0.67 | 0.800268 |
Target: 5'- -gUAgGGGCACGgaGGUGcgguGAGGUuGCUc -3' miRNA: 3'- auGUgCCCGUGCgaCCAC----UUCCA-CGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home