miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29081 3' -57.4 NC_006146.1 + 109554 1.1 0.001989
Target:  5'- gUACACGGGCACGCUGGUGAAGGUGCCu -3'
miRNA:   3'- -AUGUGCCCGUGCGACCACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 27223 0.81 0.179517
Target:  5'- gACACGGGCuuccugaugcuccACGCggcgUGaGUGAAGGUGCCa -3'
miRNA:   3'- aUGUGCCCG-------------UGCG----AC-CACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 81643 0.75 0.36459
Target:  5'- uUGC-CGGG-ACGUUGGggcucgGAGGGUGCCg -3'
miRNA:   3'- -AUGuGCCCgUGCGACCa-----CUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 11383 0.74 0.440727
Target:  5'- gGCAggUGGGCAaGCUGGUGGAGcUGCUg -3'
miRNA:   3'- aUGU--GCCCGUgCGACCACUUCcACGG- -5'
29081 3' -57.4 NC_006146.1 + 47030 0.73 0.486732
Target:  5'- -uCGCGGGCGCcCUGGgugcgaGAAGGgGCCg -3'
miRNA:   3'- auGUGCCCGUGcGACCa-----CUUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 59891 0.72 0.5154
Target:  5'- cGCGCGGGCcagcACGCUGGccaaccUGcuGGUGCg -3'
miRNA:   3'- aUGUGCCCG----UGCGACC------ACuuCCACGg -5'
29081 3' -57.4 NC_006146.1 + 61825 0.72 0.5154
Target:  5'- gGCACGGGCGg---GGUGAAGGUGaCg -3'
miRNA:   3'- aUGUGCCCGUgcgaCCACUUCCACgG- -5'
29081 3' -57.4 NC_006146.1 + 23489 0.72 0.52511
Target:  5'- -gUACGGGCugGUgGGcucgcucugGGAGGUGCCc -3'
miRNA:   3'- auGUGCCCGugCGaCCa--------CUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 61818 0.72 0.544729
Target:  5'- aACAUuaGGG-GCGCUGGUGggGGcaguggggcuggUGCCg -3'
miRNA:   3'- aUGUG--CCCgUGCGACCACuuCC------------ACGG- -5'
29081 3' -57.4 NC_006146.1 + 61429 0.72 0.544729
Target:  5'- aACGCGGGCACgGCcgGGcUGAucagcuuugAGGUGUCu -3'
miRNA:   3'- aUGUGCCCGUG-CGa-CC-ACU---------UCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 167237 0.72 0.544729
Target:  5'- cGCugGGGUgugacagaACGCUGGUGAggcAGGaGCUc -3'
miRNA:   3'- aUGugCCCG--------UGCGACCACU---UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 77317 0.72 0.553635
Target:  5'- --gGCGGGuCGCGCaugcccaggcugaUGGUGAAGGacgagGCCg -3'
miRNA:   3'- augUGCCC-GUGCG-------------ACCACUUCCa----CGG- -5'
29081 3' -57.4 NC_006146.1 + 139356 0.71 0.564579
Target:  5'- -uUAgGGGCgGCGCcGGgGggGGUGCCu -3'
miRNA:   3'- auGUgCCCG-UGCGaCCaCuuCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 145054 0.71 0.573575
Target:  5'- aGCGCGcaGCccugGCGCUGGauguaucuccucaUGAGGGUGCCg -3'
miRNA:   3'- aUGUGCc-CG----UGCGACC-------------ACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 105736 0.71 0.574577
Target:  5'- cGCAUagaGGGCAUacacacacCUGGUGAGGuGUGCCa -3'
miRNA:   3'- aUGUG---CCCGUGc-------GACCACUUC-CACGG- -5'
29081 3' -57.4 NC_006146.1 + 26267 0.71 0.592669
Target:  5'- gGCACGGGUG-GCggaauuagccugGGUGGAGGgGCCg -3'
miRNA:   3'- aUGUGCCCGUgCGa-----------CCACUUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 43218 0.71 0.594686
Target:  5'- ----gGGGCGCuGCUGGUGAgAGGaGCCc -3'
miRNA:   3'- augugCCCGUG-CGACCACU-UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 139972 0.71 0.604784
Target:  5'- -uCAUGGGCAgGUgugggcaGGUGggGGUGUUa -3'
miRNA:   3'- auGUGCCCGUgCGa------CCACuuCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 33131 0.7 0.63517
Target:  5'- cGC-CGGGC-CGCUgccccgcuccgGGUGggGGgugGCCc -3'
miRNA:   3'- aUGuGCCCGuGCGA-----------CCACuuCCa--CGG- -5'
29081 3' -57.4 NC_006146.1 + 33255 0.7 0.63517
Target:  5'- cGC-CGGGC-CGCUgccccgcuccgGGUGggGGgugGCCc -3'
miRNA:   3'- aUGuGCCCGuGCGA-----------CCACuuCCa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.