miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29081 3' -57.4 NC_006146.1 + 4513 0.66 0.850485
Target:  5'- --gGCGGGCcaGCGgggGGUGAccaucucGGUGCCg -3'
miRNA:   3'- augUGCCCG--UGCga-CCACUu------CCACGG- -5'
29081 3' -57.4 NC_006146.1 + 8039 0.67 0.834448
Target:  5'- -uCGCuGGCAccCGCUGGacccggcccUGggGGUGUCu -3'
miRNA:   3'- auGUGcCCGU--GCGACC---------ACuuCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 11383 0.74 0.440727
Target:  5'- gGCAggUGGGCAaGCUGGUGGAGcUGCUg -3'
miRNA:   3'- aUGU--GCCCGUgCGACCACUUCcACGG- -5'
29081 3' -57.4 NC_006146.1 + 12347 0.66 0.880184
Target:  5'- --gACGGGaa-GCUGGaGAAGGaGCCc -3'
miRNA:   3'- augUGCCCgugCGACCaCUUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 14776 0.66 0.858216
Target:  5'- gGCuCGGGCACcuGUUGGcggcUGAGGGgaaggagagGCCg -3'
miRNA:   3'- aUGuGCCCGUG--CGACC----ACUUCCa--------CGG- -5'
29081 3' -57.4 NC_006146.1 + 21988 0.7 0.645303
Target:  5'- --gGCGGGgAaGCUGGUGGAGG-GCa -3'
miRNA:   3'- augUGCCCgUgCGACCACUUCCaCGg -5'
29081 3' -57.4 NC_006146.1 + 23489 0.72 0.52511
Target:  5'- -gUACGGGCugGUgGGcucgcucugGGAGGUGCCc -3'
miRNA:   3'- auGUGCCCGugCGaCCa--------CUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 26267 0.71 0.592669
Target:  5'- gGCACGGGUG-GCggaauuagccugGGUGGAGGgGCCg -3'
miRNA:   3'- aUGUGCCCGUgCGa-----------CCACUUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 27223 0.81 0.179517
Target:  5'- gACACGGGCuuccugaugcuccACGCggcgUGaGUGAAGGUGCCa -3'
miRNA:   3'- aUGUGCCCG-------------UGCG----AC-CACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 32768 0.66 0.873071
Target:  5'- --aGaaGGCGCGCUGGccGGGGUcGCCa -3'
miRNA:   3'- augUgcCCGUGCGACCacUUCCA-CGG- -5'
29081 3' -57.4 NC_006146.1 + 32970 0.69 0.715493
Target:  5'- aACG-GGGCGCGCUGGgucgcGGcUGCCc -3'
miRNA:   3'- aUGUgCCCGUGCGACCacuu-CC-ACGG- -5'
29081 3' -57.4 NC_006146.1 + 33131 0.7 0.63517
Target:  5'- cGC-CGGGC-CGCUgccccgcuccgGGUGggGGgugGCCc -3'
miRNA:   3'- aUGuGCCCGuGCGA-----------CCACuuCCa--CGG- -5'
29081 3' -57.4 NC_006146.1 + 33237 0.66 0.845753
Target:  5'- gGCugGGGUucCGggGGUGggGGcuccacgaacccgcuUGCCu -3'
miRNA:   3'- aUGugCCCGu-GCgaCCACuuCC---------------ACGG- -5'
29081 3' -57.4 NC_006146.1 + 33255 0.7 0.63517
Target:  5'- cGC-CGGGC-CGCUgccccgcuccgGGUGggGGgugGCCc -3'
miRNA:   3'- aUGuGCCCGuGCGA-----------CCACuuCCa--CGG- -5'
29081 3' -57.4 NC_006146.1 + 33377 0.7 0.63517
Target:  5'- cGC-CGGGC-CGCUgccccgcuccgGGUGggGGgugGCCc -3'
miRNA:   3'- aUGuGCCCGuGCGA-----------CCACuuCCa--CGG- -5'
29081 3' -57.4 NC_006146.1 + 43218 0.71 0.594686
Target:  5'- ----gGGGCGCuGCUGGUGAgAGGaGCCc -3'
miRNA:   3'- augugCCCGUG-CGACCACU-UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 43271 0.66 0.873071
Target:  5'- gGCACaGGGCGgccUGgaGGUccGGcAGGUGCCu -3'
miRNA:   3'- aUGUG-CCCGU---GCgaCCA--CU-UCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 44751 0.69 0.725311
Target:  5'- gGCuccaauCGGGCucuCGggGGaGAGGGUGCCg -3'
miRNA:   3'- aUGu-----GCCCGu--GCgaCCaCUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 46732 0.66 0.865003
Target:  5'- gAgGCGGGCggaggccACGCUGGccAGGGUccucGCCu -3'
miRNA:   3'- aUgUGCCCG-------UGCGACCacUUCCA----CGG- -5'
29081 3' -57.4 NC_006146.1 + 47030 0.73 0.486732
Target:  5'- -uCGCGGGCGCcCUGGgugcgaGAAGGgGCCg -3'
miRNA:   3'- auGUGCCCGUGcGACCa-----CUUCCaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.