miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29081 3' -57.4 NC_006146.1 + 50897 0.66 0.850485
Target:  5'- gGCGCGGGUGCGgcCUGGgccuccGUGCCc -3'
miRNA:   3'- aUGUGCCCGUGC--GACCacuuc-CACGG- -5'
29081 3' -57.4 NC_006146.1 + 53471 0.66 0.857452
Target:  5'- gGCGCGGGUgccuCGUcGGUcagggccGggGGUGCg -3'
miRNA:   3'- aUGUGCCCGu---GCGaCCA-------CuuCCACGg -5'
29081 3' -57.4 NC_006146.1 + 55689 0.66 0.873071
Target:  5'- aGCACGGGCACGgCcGccgccgGggGGcucUGCCc -3'
miRNA:   3'- aUGUGCCCGUGC-GaCca----CuuCC---ACGG- -5'
29081 3' -57.4 NC_006146.1 + 56644 0.69 0.695657
Target:  5'- -uCugGGGCACcacuacgaGCUGGcccucccuGAGGUGCCg -3'
miRNA:   3'- auGugCCCGUG--------CGACCac------UUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 59891 0.72 0.5154
Target:  5'- cGCGCGGGCcagcACGCUGGccaaccUGcuGGUGCg -3'
miRNA:   3'- aUGUGCCCG----UGCGACC------ACuuCCACGg -5'
29081 3' -57.4 NC_006146.1 + 61429 0.72 0.544729
Target:  5'- aACGCGGGCACgGCcgGGcUGAucagcuuugAGGUGUCu -3'
miRNA:   3'- aUGUGCCCGUG-CGa-CC-ACU---------UCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 61818 0.72 0.544729
Target:  5'- aACAUuaGGG-GCGCUGGUGggGGcaguggggcuggUGCCg -3'
miRNA:   3'- aUGUG--CCCgUGCGACCACuuCC------------ACGG- -5'
29081 3' -57.4 NC_006146.1 + 61825 0.72 0.5154
Target:  5'- gGCACGGGCGg---GGUGAAGGUGaCg -3'
miRNA:   3'- aUGUGCCCGUgcgaCCACUUCCACgG- -5'
29081 3' -57.4 NC_006146.1 + 64121 0.69 0.714507
Target:  5'- gGCACGGGUggaggacACGCUGGUcuuGAauucagucAGG-GCCu -3'
miRNA:   3'- aUGUGCCCG-------UGCGACCA---CU--------UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 65468 0.68 0.782251
Target:  5'- cACGCuGGCGgGCU-GUGcGGGUGCUg -3'
miRNA:   3'- aUGUGcCCGUgCGAcCACuUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 65507 0.66 0.880184
Target:  5'- ----gGGGCugGUUGGUGuGGG-GUCu -3'
miRNA:   3'- augugCCCGugCGACCACuUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 65837 0.66 0.880184
Target:  5'- --gAUGGGC-CagUGGUGAuguGGUGCCg -3'
miRNA:   3'- augUGCCCGuGcgACCACUu--CCACGG- -5'
29081 3' -57.4 NC_006146.1 + 70164 0.67 0.834448
Target:  5'- gGC-CGGG-GCGCUGGUGGccGGcgagGCCg -3'
miRNA:   3'- aUGuGCCCgUGCGACCACUu-CCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 76378 0.67 0.834448
Target:  5'- cACGagaGGGCGCGCcGGgGGAGGgaccgggggcGCCg -3'
miRNA:   3'- aUGUg--CCCGUGCGaCCaCUUCCa---------CGG- -5'
29081 3' -57.4 NC_006146.1 + 77317 0.72 0.553635
Target:  5'- --gGCGGGuCGCGCaugcccaggcugaUGGUGAAGGacgagGCCg -3'
miRNA:   3'- augUGCCC-GUGCG-------------ACCACUUCCa----CGG- -5'
29081 3' -57.4 NC_006146.1 + 77915 0.67 0.826155
Target:  5'- cGCAgGGGCGgGC-GGccucGcAGGUGCCg -3'
miRNA:   3'- aUGUgCCCGUgCGaCCa---CuUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 77963 0.69 0.715493
Target:  5'- gGC-CGGaGC-CGgUGGccuUGGAGGUGCCg -3'
miRNA:   3'- aUGuGCC-CGuGCgACC---ACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 81643 0.75 0.36459
Target:  5'- uUGC-CGGG-ACGUUGGggcucgGAGGGUGCCg -3'
miRNA:   3'- -AUGuGCCCgUGCGACCa-----CUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 85561 0.66 0.850485
Target:  5'- cACACggucggGGGCACGUggGGUGGcAGGaggcaGCCg -3'
miRNA:   3'- aUGUG------CCCGUGCGa-CCACU-UCCa----CGG- -5'
29081 3' -57.4 NC_006146.1 + 85660 0.68 0.782251
Target:  5'- -cCACGGGgACcCUGGUGGaugaaAGG-GCCu -3'
miRNA:   3'- auGUGCCCgUGcGACCACU-----UCCaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.