miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29081 3' -57.4 NC_006146.1 + 170247 0.68 0.738921
Target:  5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3'
miRNA:   3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 169316 0.68 0.738921
Target:  5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3'
miRNA:   3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 168384 0.68 0.738921
Target:  5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3'
miRNA:   3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 167867 0.67 0.800268
Target:  5'- -gUAgGGGCACGgaGGUGcgguGAGGUuGCUc -3'
miRNA:   3'- auGUgCCCGUGCgaCCAC----UUCCA-CGG- -5'
29081 3' -57.4 NC_006146.1 + 167756 0.66 0.858216
Target:  5'- gGCGCaggggccggguGGGCGCGCaUGGcucGAGacgcacGGUGCCg -3'
miRNA:   3'- aUGUG-----------CCCGUGCG-ACCa--CUU------CCACGG- -5'
29081 3' -57.4 NC_006146.1 + 167452 0.68 0.738921
Target:  5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3'
miRNA:   3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 167237 0.72 0.544729
Target:  5'- cGCugGGGUgugacagaACGCUGGUGAggcAGGaGCUc -3'
miRNA:   3'- aUGugCCCG--------UGCGACCACU---UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 166984 0.67 0.825316
Target:  5'- gACG-GGGCAgugGCUGGgcgcgguUGAAGGUGCa -3'
miRNA:   3'- aUGUgCCCGUg--CGACC-------ACUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 156228 0.67 0.826155
Target:  5'- gACGCGGGCccccucgGCcgUGGacGGGGUGCCg -3'
miRNA:   3'- aUGUGCCCGug-----CG--ACCacUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 155700 0.69 0.725311
Target:  5'- gUACuGCGGGUuCGa-GGUGAAGGcgGCCg -3'
miRNA:   3'- -AUG-UGCCCGuGCgaCCACUUCCa-CGG- -5'
29081 3' -57.4 NC_006146.1 + 153423 0.67 0.817688
Target:  5'- gGgGCGGGUgugGCUGGcuuUGGAGGgGCCg -3'
miRNA:   3'- aUgUGCCCGug-CGACC---ACUUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 148139 0.67 0.800268
Target:  5'- cGCAUGGGCuucgUGCUGGUc-AGG-GCCc -3'
miRNA:   3'- aUGUGCCCGu---GCGACCAcuUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 146466 0.67 0.834448
Target:  5'- cACGCGGGCGCaGCacccauUGGuUGcAGGcgGCCu -3'
miRNA:   3'- aUGUGCCCGUG-CG------ACC-ACuUCCa-CGG- -5'
29081 3' -57.4 NC_006146.1 + 145054 0.71 0.573575
Target:  5'- aGCGCGcaGCccugGCGCUGGauguaucuccucaUGAGGGUGCCg -3'
miRNA:   3'- aUGUGCc-CG----UGCGACC-------------ACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 139972 0.71 0.604784
Target:  5'- -uCAUGGGCAgGUgugggcaGGUGggGGUGUUa -3'
miRNA:   3'- auGUGCCCGUgCGa------CCACuuCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 139356 0.71 0.564579
Target:  5'- -uUAgGGGCgGCGCcGGgGggGGUGCCu -3'
miRNA:   3'- auGUgCCCG-UGCGaCCaCuuCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 139073 0.66 0.850485
Target:  5'- cAUACGGGC-C-CUGGUGGcgcGGGggGCUg -3'
miRNA:   3'- aUGUGCCCGuGcGACCACU---UCCa-CGG- -5'
29081 3' -57.4 NC_006146.1 + 137376 0.68 0.776739
Target:  5'- aGC-CGGGCACaaccuagggagggagGCcGG-GAGGGUGCUg -3'
miRNA:   3'- aUGuGCCCGUG---------------CGaCCaCUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 136801 0.69 0.715493
Target:  5'- aACG-GGGCGCGCUGGgucgcGGcUGCCc -3'
miRNA:   3'- aUGUgCCCGUGCGACCacuu-CC-ACGG- -5'
29081 3' -57.4 NC_006146.1 + 136598 0.66 0.873071
Target:  5'- --aGaaGGCGCGCUGGccGGGGUcGCCa -3'
miRNA:   3'- augUgcCCGUGCGACCacUUCCA-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.