miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29081 3' -57.4 NC_006146.1 + 122967 0.66 0.850485
Target:  5'- cGCAgCGGG-AgGC-GG-GGAGGUGCCa -3'
miRNA:   3'- aUGU-GCCCgUgCGaCCaCUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 115056 0.69 0.725311
Target:  5'- cUGCACcucGGUguuGCUGGUGGccGGGUGCCc -3'
miRNA:   3'- -AUGUGc--CCGug-CGACCACU--UCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 113668 0.68 0.73505
Target:  5'- -cCACGGGCcCGUggaccaccgUGGUGAucuuauucagguAGGUGCUc -3'
miRNA:   3'- auGUGCCCGuGCG---------ACCACU------------UCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 111891 0.66 0.865747
Target:  5'- ----gGGGCAgUGCUGGUGAgcAGG-GCUu -3'
miRNA:   3'- augugCCCGU-GCGACCACU--UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 109554 1.1 0.001989
Target:  5'- gUACACGGGCACGCUGGUGAAGGUGCCu -3'
miRNA:   3'- -AUGUGCCCGUGCGACCACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 105736 0.71 0.574577
Target:  5'- cGCAUagaGGGCAUacacacacCUGGUGAGGuGUGCCa -3'
miRNA:   3'- aUGUG---CCCGUGc-------GACCACUUC-CACGG- -5'
29081 3' -57.4 NC_006146.1 + 99068 0.67 0.817688
Target:  5'- --gGCGGuGC-CGUagUGGUGGAGG-GCCc -3'
miRNA:   3'- augUGCC-CGuGCG--ACCACUUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 97248 0.66 0.858216
Target:  5'- gACACaagguGGCugGCUcGGUGuu-GUGCCa -3'
miRNA:   3'- aUGUGc----CCGugCGA-CCACuucCACGG- -5'
29081 3' -57.4 NC_006146.1 + 94995 0.67 0.834448
Target:  5'- gGCAUgggGGGCA-GCUGa-GGAGGUGCUg -3'
miRNA:   3'- aUGUG---CCCGUgCGACcaCUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 93755 0.66 0.84256
Target:  5'- ---cCGGaucaGCAUGUuguUGGUGAAGGUGCa -3'
miRNA:   3'- auguGCC----CGUGCG---ACCACUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 92309 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 92279 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 92219 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 92189 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 92159 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 92129 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 92099 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 92070 0.67 0.809057
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcgGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa--CGG- -5'
29081 3' -57.4 NC_006146.1 + 92040 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 92010 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.