miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29081 3' -57.4 NC_006146.1 + 109554 1.1 0.001989
Target:  5'- gUACACGGGCACGCUGGUGAAGGUGCCu -3'
miRNA:   3'- -AUGUGCCCGUGCGACCACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 170247 0.68 0.738921
Target:  5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3'
miRNA:   3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 65468 0.68 0.782251
Target:  5'- cACGCuGGCGgGCU-GUGcGGGUGCUg -3'
miRNA:   3'- aUGUGcCCGUgCGAcCACuUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 65837 0.66 0.880184
Target:  5'- --gAUGGGC-CagUGGUGAuguGGUGCCg -3'
miRNA:   3'- augUGCCCGuGcgACCACUu--CCACGG- -5'
29081 3' -57.4 NC_006146.1 + 61429 0.72 0.544729
Target:  5'- aACGCGGGCACgGCcgGGcUGAucagcuuugAGGUGUCu -3'
miRNA:   3'- aUGUGCCCGUG-CGa-CC-ACU---------UCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 145054 0.71 0.573575
Target:  5'- aGCGCGcaGCccugGCGCUGGauguaucuccucaUGAGGGUGCCg -3'
miRNA:   3'- aUGUGCc-CG----UGCGACC-------------ACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 139972 0.71 0.604784
Target:  5'- -uCAUGGGCAgGUgugggcaGGUGggGGUGUUa -3'
miRNA:   3'- auGUGCCCGUgCGa------CCACuuCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 33131 0.7 0.63517
Target:  5'- cGC-CGGGC-CGCUgccccgcuccgGGUGggGGgugGCCc -3'
miRNA:   3'- aUGuGCCCGuGCGA-----------CCACuuCCa--CGG- -5'
29081 3' -57.4 NC_006146.1 + 91103 0.69 0.705605
Target:  5'- gGCAguGGCA-GCggagggaGGUGAGGGUGCCg -3'
miRNA:   3'- aUGUgcCCGUgCGa------CCACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 169316 0.68 0.738921
Target:  5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3'
miRNA:   3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 155700 0.69 0.725311
Target:  5'- gUACuGCGGGUuCGa-GGUGAAGGcgGCCg -3'
miRNA:   3'- -AUG-UGCCCGuGCgaCCACUUCCa-CGG- -5'
29081 3' -57.4 NC_006146.1 + 33377 0.7 0.63517
Target:  5'- cGC-CGGGC-CGCUgccccgcuccgGGUGggGGgugGCCc -3'
miRNA:   3'- aUGuGCCCGuGCGA-----------CCACuuCCa--CGG- -5'
29081 3' -57.4 NC_006146.1 + 47030 0.73 0.486732
Target:  5'- -uCGCGGGCGCcCUGGgugcgaGAAGGgGCCg -3'
miRNA:   3'- auGUGCCCGUGcGACCa-----CUUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 167452 0.68 0.738921
Target:  5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3'
miRNA:   3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 61825 0.72 0.5154
Target:  5'- gGCACGGGCGg---GGUGAAGGUGaCg -3'
miRNA:   3'- aUGUGCCCGUgcgaCCACUUCCACgG- -5'
29081 3' -57.4 NC_006146.1 + 33255 0.7 0.63517
Target:  5'- cGC-CGGGC-CGCUgccccgcuccgGGUGggGGgugGCCc -3'
miRNA:   3'- aUGuGCCCGuGCGA-----------CCACuuCCa--CGG- -5'
29081 3' -57.4 NC_006146.1 + 168384 0.68 0.738921
Target:  5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3'
miRNA:   3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 85660 0.68 0.782251
Target:  5'- -cCACGGGgACcCUGGUGGaugaaAGG-GCCu -3'
miRNA:   3'- auGUGCCCgUGcGACCACU-----UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 59891 0.72 0.5154
Target:  5'- cGCGCGGGCcagcACGCUGGccaaccUGcuGGUGCg -3'
miRNA:   3'- aUGUGCCCG----UGCGACC------ACuuCCACGg -5'
29081 3' -57.4 NC_006146.1 + 105736 0.71 0.574577
Target:  5'- cGCAUagaGGGCAUacacacacCUGGUGAGGuGUGCCa -3'
miRNA:   3'- aUGUG---CCCGUGc-------GACCACUUC-CACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.