miRNA display CGI


Results 21 - 40 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29081 3' -57.4 NC_006146.1 + 167452 0.68 0.738921
Target:  5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3'
miRNA:   3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 59891 0.72 0.5154
Target:  5'- cGCGCGGGCcagcACGCUGGccaaccUGcuGGUGCg -3'
miRNA:   3'- aUGUGCCCG----UGCGACC------ACuuCCACGg -5'
29081 3' -57.4 NC_006146.1 + 46732 0.66 0.865003
Target:  5'- gAgGCGGGCggaggccACGCUGGccAGGGUccucGCCu -3'
miRNA:   3'- aUgUGCCCG-------UGCGACCacUUCCA----CGG- -5'
29081 3' -57.4 NC_006146.1 + 146466 0.67 0.834448
Target:  5'- cACGCGGGCGCaGCacccauUGGuUGcAGGcgGCCu -3'
miRNA:   3'- aUGUGCCCGUG-CG------ACC-ACuUCCa-CGG- -5'
29081 3' -57.4 NC_006146.1 + 170247 0.68 0.738921
Target:  5'- cGgGCGGGCAUGCUccggGGUaacgagaggagagagGAGGGUGUg -3'
miRNA:   3'- aUgUGCCCGUGCGA----CCA---------------CUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 61825 0.72 0.5154
Target:  5'- gGCACGGGCGg---GGUGAAGGUGaCg -3'
miRNA:   3'- aUGUGCCCGUgcgaCCACUUCCACgG- -5'
29081 3' -57.4 NC_006146.1 + 70164 0.67 0.834448
Target:  5'- gGC-CGGG-GCGCUGGUGGccGGcgagGCCg -3'
miRNA:   3'- aUGuGCCCgUGCGACCACUu-CCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 47030 0.73 0.486732
Target:  5'- -uCGCGGGCGCcCUGGgugcgaGAAGGgGCCg -3'
miRNA:   3'- auGUGCCCGUGcGACCa-----CUUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 109554 1.1 0.001989
Target:  5'- gUACACGGGCACGCUGGUGAAGGUGCCu -3'
miRNA:   3'- -AUGUGCCCGUGCGACCACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 33377 0.7 0.63517
Target:  5'- cGC-CGGGC-CGCUgccccgcuccgGGUGggGGgugGCCc -3'
miRNA:   3'- aUGuGCCCGuGCGA-----------CCACuuCCa--CGG- -5'
29081 3' -57.4 NC_006146.1 + 85660 0.68 0.782251
Target:  5'- -cCACGGGgACcCUGGUGGaugaaAGG-GCCu -3'
miRNA:   3'- auGUGCCCgUGcGACCACU-----UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 65837 0.66 0.880184
Target:  5'- --gAUGGGC-CagUGGUGAuguGGUGCCg -3'
miRNA:   3'- augUGCCCGuGcgACCACUu--CCACGG- -5'
29081 3' -57.4 NC_006146.1 + 99068 0.67 0.817688
Target:  5'- --gGCGGuGC-CGUagUGGUGGAGG-GCCc -3'
miRNA:   3'- augUGCC-CGuGCG--ACCACUUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 93755 0.66 0.84256
Target:  5'- ---cCGGaucaGCAUGUuguUGGUGAAGGUGCa -3'
miRNA:   3'- auguGCC----CGUGCG---ACCACUUCCACGg -5'
29081 3' -57.4 NC_006146.1 + 122967 0.66 0.850485
Target:  5'- cGCAgCGGG-AgGC-GG-GGAGGUGCCa -3'
miRNA:   3'- aUGU-GCCCgUgCGaCCaCUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 111891 0.66 0.865747
Target:  5'- ----gGGGCAgUGCUGGUGAgcAGG-GCUu -3'
miRNA:   3'- augugCCCGU-GCGACCACU--UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 91103 0.69 0.705605
Target:  5'- gGCAguGGCA-GCggagggaGGUGAGGGUGCCg -3'
miRNA:   3'- aUGUgcCCGUgCGa------CCACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 61429 0.72 0.544729
Target:  5'- aACGCGGGCACgGCcgGGcUGAucagcuuugAGGUGUCu -3'
miRNA:   3'- aUGUGCCCGUG-CGa-CC-ACU---------UCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 139972 0.71 0.604784
Target:  5'- -uCAUGGGCAgGUgugggcaGGUGggGGUGUUa -3'
miRNA:   3'- auGUGCCCGUgCGa------CCACuuCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 136801 0.69 0.715493
Target:  5'- aACG-GGGCGCGCUGGgucgcGGcUGCCc -3'
miRNA:   3'- aUGUgCCCGUGCGACCacuu-CC-ACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.