miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29081 3' -57.4 NC_006146.1 + 33237 0.66 0.845753
Target:  5'- gGCugGGGUucCGggGGUGggGGcuccacgaacccgcuUGCCu -3'
miRNA:   3'- aUGugCCCGu-GCgaCCACuuCC---------------ACGG- -5'
29081 3' -57.4 NC_006146.1 + 136598 0.66 0.873071
Target:  5'- --aGaaGGCGCGCUGGccGGGGUcGCCa -3'
miRNA:   3'- augUgcCCGUGCGACCacUUCCA-CGG- -5'
29081 3' -57.4 NC_006146.1 + 32970 0.69 0.715493
Target:  5'- aACG-GGGCGCGCUGGgucgcGGcUGCCc -3'
miRNA:   3'- aUGUgCCCGUGCGACCacuu-CC-ACGG- -5'
29081 3' -57.4 NC_006146.1 + 167756 0.66 0.858216
Target:  5'- gGCGCaggggccggguGGGCGCGCaUGGcucGAGacgcacGGUGCCg -3'
miRNA:   3'- aUGUG-----------CCCGUGCG-ACCa--CUU------CCACGG- -5'
29081 3' -57.4 NC_006146.1 + 97248 0.66 0.858216
Target:  5'- gACACaagguGGCugGCUcGGUGuu-GUGCCa -3'
miRNA:   3'- aUGUGc----CCGugCGA-CCACuucCACGG- -5'
29081 3' -57.4 NC_006146.1 + 92279 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 92219 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 92189 0.66 0.84256
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcggGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa---CGG- -5'
29081 3' -57.4 NC_006146.1 + 137376 0.68 0.776739
Target:  5'- aGC-CGGGCACaaccuagggagggagGCcGG-GAGGGUGCUg -3'
miRNA:   3'- aUGuGCCCGUG---------------CGaCCaCUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 113668 0.68 0.73505
Target:  5'- -cCACGGGCcCGUggaccaccgUGGUGAucuuauucagguAGGUGCUc -3'
miRNA:   3'- auGUGCCCGuGCG---------ACCACU------------UCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 44751 0.69 0.725311
Target:  5'- gGCuccaauCGGGCucuCGggGGaGAGGGUGCCg -3'
miRNA:   3'- aUGu-----GCCCGu--GCgaCCaCUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 136801 0.69 0.715493
Target:  5'- aACG-GGGCGCGCUGGgucgcGGcUGCCc -3'
miRNA:   3'- aUGUgCCCGUGCGACCacuu-CC-ACGG- -5'
29081 3' -57.4 NC_006146.1 + 92070 0.67 0.809057
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcgGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa--CGG- -5'
29081 3' -57.4 NC_006146.1 + 94995 0.67 0.834448
Target:  5'- gGCAUgggGGGCA-GCUGa-GGAGGUGCUg -3'
miRNA:   3'- aUGUG---CCCGUgCGACcaCUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 8039 0.67 0.834448
Target:  5'- -uCGCuGGCAccCGCUGGacccggcccUGggGGUGUCu -3'
miRNA:   3'- auGUGcCCGU--GCGACC---------ACuuCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 77915 0.67 0.826155
Target:  5'- cGCAgGGGCGgGC-GGccucGcAGGUGCCg -3'
miRNA:   3'- aUGUgCCCGUgCGaCCa---CuUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 23489 0.72 0.52511
Target:  5'- -gUACGGGCugGUgGGcucgcucugGGAGGUGCCc -3'
miRNA:   3'- auGUGCCCGugCGaCCa--------CUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 11383 0.74 0.440727
Target:  5'- gGCAggUGGGCAaGCUGGUGGAGcUGCUg -3'
miRNA:   3'- aUGU--GCCCGUgCGACCACUUCcACGG- -5'
29081 3' -57.4 NC_006146.1 + 81643 0.75 0.36459
Target:  5'- uUGC-CGGG-ACGUUGGggcucgGAGGGUGCCg -3'
miRNA:   3'- -AUGuGCCCgUGCGACCa-----CUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 27223 0.81 0.179517
Target:  5'- gACACGGGCuuccugaugcuccACGCggcgUGaGUGAAGGUGCCa -3'
miRNA:   3'- aUGUGCCCG-------------UGCG----AC-CACUUCCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.