miRNA display CGI


Results 61 - 80 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29081 3' -57.4 NC_006146.1 + 43271 0.66 0.873071
Target:  5'- gGCACaGGGCGgccUGgaGGUccGGcAGGUGCCu -3'
miRNA:   3'- aUGUG-CCCGU---GCgaCCA--CU-UCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 94995 0.67 0.834448
Target:  5'- gGCAUgggGGGCA-GCUGa-GGAGGUGCUg -3'
miRNA:   3'- aUGUG---CCCGUgCGACcaCUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 77915 0.67 0.826155
Target:  5'- cGCAgGGGCGgGC-GGccucGcAGGUGCCg -3'
miRNA:   3'- aUGUgCCCGUgCGaCCa---CuUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 23489 0.72 0.52511
Target:  5'- -gUACGGGCugGUgGGcucgcucugGGAGGUGCCc -3'
miRNA:   3'- auGUGCCCGugCGaCCa--------CUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 61818 0.72 0.544729
Target:  5'- aACAUuaGGG-GCGCUGGUGggGGcaguggggcuggUGCCg -3'
miRNA:   3'- aUGUG--CCCgUGCGACCACuuCC------------ACGG- -5'
29081 3' -57.4 NC_006146.1 + 167237 0.72 0.544729
Target:  5'- cGCugGGGUgugacagaACGCUGGUGAggcAGGaGCUc -3'
miRNA:   3'- aUGugCCCG--------UGCGACCACU---UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 77317 0.72 0.553635
Target:  5'- --gGCGGGuCGCGCaugcccaggcugaUGGUGAAGGacgagGCCg -3'
miRNA:   3'- augUGCCC-GUGCG-------------ACCACUUCCa----CGG- -5'
29081 3' -57.4 NC_006146.1 + 139356 0.71 0.564579
Target:  5'- -uUAgGGGCgGCGCcGGgGggGGUGCCu -3'
miRNA:   3'- auGUgCCCG-UGCGaCCaCuuCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 26267 0.71 0.592669
Target:  5'- gGCACGGGUG-GCggaauuagccugGGUGGAGGgGCCg -3'
miRNA:   3'- aUGUGCCCGUgCGa-----------CCACUUCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 43218 0.71 0.594686
Target:  5'- ----gGGGCGCuGCUGGUGAgAGGaGCCc -3'
miRNA:   3'- augugCCCGUG-CGACCACU-UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 21988 0.7 0.645303
Target:  5'- --gGCGGGgAaGCUGGUGGAGG-GCa -3'
miRNA:   3'- augUGCCCgUgCGACCACUUCCaCGg -5'
29081 3' -57.4 NC_006146.1 + 56644 0.69 0.695657
Target:  5'- -uCugGGGCACcacuacgaGCUGGcccucccuGAGGUGCCg -3'
miRNA:   3'- auGugCCCGUG--------CGACCac------UUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 64121 0.69 0.714507
Target:  5'- gGCACGGGUggaggacACGCUGGUcuuGAauucagucAGG-GCCu -3'
miRNA:   3'- aUGUGCCCG-------UGCGACCA---CU--------UCCaCGG- -5'
29081 3' -57.4 NC_006146.1 + 77963 0.69 0.715493
Target:  5'- gGC-CGGaGC-CGgUGGccuUGGAGGUGCCg -3'
miRNA:   3'- aUGuGCC-CGuGCgACC---ACUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 136801 0.69 0.715493
Target:  5'- aACG-GGGCGCGCUGGgucgcGGcUGCCc -3'
miRNA:   3'- aUGUgCCCGUGCGACCacuu-CC-ACGG- -5'
29081 3' -57.4 NC_006146.1 + 44751 0.69 0.725311
Target:  5'- gGCuccaauCGGGCucuCGggGGaGAGGGUGCCg -3'
miRNA:   3'- aUGu-----GCCCGu--GCgaCCaCUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 113668 0.68 0.73505
Target:  5'- -cCACGGGCcCGUggaccaccgUGGUGAucuuauucagguAGGUGCUc -3'
miRNA:   3'- auGUGCCCGuGCG---------ACCACU------------UCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 137376 0.68 0.776739
Target:  5'- aGC-CGGGCACaaccuagggagggagGCcGG-GAGGGUGCUg -3'
miRNA:   3'- aUGuGCCCGUG---------------CGaCCaCUUCCACGG- -5'
29081 3' -57.4 NC_006146.1 + 167867 0.67 0.800268
Target:  5'- -gUAgGGGCACGgaGGUGcgguGAGGUuGCUc -3'
miRNA:   3'- auGUgCCCGUGCgaCCAC----UUCCA-CGG- -5'
29081 3' -57.4 NC_006146.1 + 92070 0.67 0.809057
Target:  5'- -cCugGGGC-UGCUGcUGggGGgcgGCCc -3'
miRNA:   3'- auGugCCCGuGCGACcACuuCCa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.