miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29081 5' -65.2 NC_006146.1 + 115394 0.66 0.535896
Target:  5'- -uGGCCGCUCGcGuGCAGGAgGCaGCugGCg -3'
miRNA:   3'- auCCGGUGGGC-C-CGUCCUgCGgCG--CG- -5'
29081 5' -65.2 NC_006146.1 + 76287 0.66 0.535896
Target:  5'- -cGGCCcaguACgUGGGCuGGACGCgGCu- -3'
miRNA:   3'- auCCGG----UGgGCCCGuCCUGCGgCGcg -5'
29081 5' -65.2 NC_006146.1 + 129033 0.66 0.535896
Target:  5'- gGGGCacggcgcaGCCCgagcuGGGCccaGACGCCgGCGCa -3'
miRNA:   3'- aUCCGg-------UGGG-----CCCGuc-CUGCGG-CGCG- -5'
29081 5' -65.2 NC_006146.1 + 129854 0.66 0.535896
Target:  5'- gAGGCC-CCCaGGGC----CGCCGCGg -3'
miRNA:   3'- aUCCGGuGGG-CCCGuccuGCGGCGCg -5'
29081 5' -65.2 NC_006146.1 + 36170 0.66 0.534966
Target:  5'- -uGGCCuggcugGCCUGGugcaugcaugccuGCAGGACGuuGUGUu -3'
miRNA:   3'- auCCGG------UGGGCC-------------CGUCCUGCggCGCG- -5'
29081 5' -65.2 NC_006146.1 + 4901 0.66 0.529394
Target:  5'- --cGCCGCCUGGugacagaGCcggacccucgcugucGGGugGCCGUGCu -3'
miRNA:   3'- aucCGGUGGGCC-------CG---------------UCCugCGGCGCG- -5'
29081 5' -65.2 NC_006146.1 + 53333 0.66 0.526616
Target:  5'- gAGGagGCCCGGcggccGCGGGGCGgCGUGa -3'
miRNA:   3'- aUCCggUGGGCC-----CGUCCUGCgGCGCg -5'
29081 5' -65.2 NC_006146.1 + 137976 0.66 0.526616
Target:  5'- cGGGCCuCCCgggggcccggcGGGguGGGgGgUGCGCc -3'
miRNA:   3'- aUCCGGuGGG-----------CCCguCCUgCgGCGCG- -5'
29081 5' -65.2 NC_006146.1 + 54935 0.66 0.526616
Target:  5'- gUAGGCCucgacgucuGCCC--GCGGGGCGaCCGcCGCc -3'
miRNA:   3'- -AUCCGG---------UGGGccCGUCCUGC-GGC-GCG- -5'
29081 5' -65.2 NC_006146.1 + 122149 0.66 0.526616
Target:  5'- -cGGCUGCuggaggCCGGGCgcaaggagaAGGAgcUGCUGCGCg -3'
miRNA:   3'- auCCGGUG------GGCCCG---------UCCU--GCGGCGCG- -5'
29081 5' -65.2 NC_006146.1 + 86611 0.66 0.526616
Target:  5'- aGGGgCAgCUGGGCuugaGGGGCaGCUGgGCa -3'
miRNA:   3'- aUCCgGUgGGCCCG----UCCUG-CGGCgCG- -5'
29081 5' -65.2 NC_006146.1 + 39862 0.66 0.526616
Target:  5'- gGGGCUguguGCCCgGGGgAGGAgGCUGagGCu -3'
miRNA:   3'- aUCCGG----UGGG-CCCgUCCUgCGGCg-CG- -5'
29081 5' -65.2 NC_006146.1 + 140689 0.66 0.526616
Target:  5'- -cGGCCAgCCcGGCGGG-CGCaGCGg -3'
miRNA:   3'- auCCGGUgGGcCCGUCCuGCGgCGCg -5'
29081 5' -65.2 NC_006146.1 + 114821 0.66 0.526616
Target:  5'- -uGGCCgacaccuacuugGCCC-GGUGGGACGCCuuccCGCg -3'
miRNA:   3'- auCCGG------------UGGGcCCGUCCUGCGGc---GCG- -5'
29081 5' -65.2 NC_006146.1 + 126254 0.66 0.526616
Target:  5'- cAGG-CGCCCGGGCuugGGaGACGCCucuccaGCu -3'
miRNA:   3'- aUCCgGUGGGCCCG---UC-CUGCGGcg----CG- -5'
29081 5' -65.2 NC_006146.1 + 125329 0.66 0.526616
Target:  5'- cAGGCCGCCUGGcuGCGcgagcuccucgcGGAgGCCaGgGCg -3'
miRNA:   3'- aUCCGGUGGGCC--CGU------------CCUgCGG-CgCG- -5'
29081 5' -65.2 NC_006146.1 + 94021 0.66 0.525691
Target:  5'- -cGuGCgGCCC-GGCAGGggcacggccccgaGCGCCGcCGCg -3'
miRNA:   3'- auC-CGgUGGGcCCGUCC-------------UGCGGC-GCG- -5'
29081 5' -65.2 NC_006146.1 + 43276 0.66 0.525691
Target:  5'- aGGGCgGCCUGgagguccGGCAGG-UGCCuaGCg -3'
miRNA:   3'- aUCCGgUGGGC-------CCGUCCuGCGGcgCG- -5'
29081 5' -65.2 NC_006146.1 + 41381 0.66 0.521077
Target:  5'- gUGGGgCAUCCGGccgcuccacgaacccGCAGacguaGACgGCCGCGCu -3'
miRNA:   3'- -AUCCgGUGGGCC---------------CGUC-----CUG-CGGCGCG- -5'
29081 5' -65.2 NC_006146.1 + 115960 0.66 0.517396
Target:  5'- -cGGUCGCCCcgcGGGCA-GACGUCGagGCc -3'
miRNA:   3'- auCCGGUGGG---CCCGUcCUGCGGCg-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.