miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 3' -55.1 NC_006146.1 + 13763 0.66 0.954163
Target:  5'- uCGUGGACgCCaugggcgaGGCgUGCGCCucgcugacucugGACGACGc -3'
miRNA:   3'- -GCACCUG-GG--------CCGgAUGUGG------------UUGUUGU- -5'
29082 3' -55.1 NC_006146.1 + 42424 0.66 0.954163
Target:  5'- cCGUGGGCCCccuGGCCUACAa-------- -3'
miRNA:   3'- -GCACCUGGG---CCGGAUGUgguuguugu -5'
29082 3' -55.1 NC_006146.1 + 47536 0.66 0.954163
Target:  5'- gCG-GGGCCCccGGCCaGCGCCAGagcucccuCGGCGa -3'
miRNA:   3'- -GCaCCUGGG--CCGGaUGUGGUU--------GUUGU- -5'
29082 3' -55.1 NC_006146.1 + 131730 0.66 0.954163
Target:  5'- aGUGGACCCGGaggccaaaCUGCaauucACCAGgGucACAu -3'
miRNA:   3'- gCACCUGGGCCg-------GAUG-----UGGUUgU--UGU- -5'
29082 3' -55.1 NC_006146.1 + 169272 0.66 0.954163
Target:  5'- cCG-GGGCCUGGCggGgGCCAGCG-CGg -3'
miRNA:   3'- -GCaCCUGGGCCGgaUgUGGUUGUuGU- -5'
29082 3' -55.1 NC_006146.1 + 156547 0.66 0.954163
Target:  5'- cCG-GGACCCGaCCc-CACCAGCAGg- -3'
miRNA:   3'- -GCaCCUGGGCcGGauGUGGUUGUUgu -5'
29082 3' -55.1 NC_006146.1 + 170203 0.66 0.954163
Target:  5'- cCG-GGGCCUGGCggGgGCCAGCG-CGg -3'
miRNA:   3'- -GCaCCUGGGCCGgaUgUGGUUGUuGU- -5'
29082 3' -55.1 NC_006146.1 + 167408 0.66 0.954163
Target:  5'- cCG-GGGCCUGGCggGgGCCAGCG-CGg -3'
miRNA:   3'- -GCaCCUGGGCCGgaUgUGGUUGUuGU- -5'
29082 3' -55.1 NC_006146.1 + 168340 0.66 0.954163
Target:  5'- cCG-GGGCCUGGCggGgGCCAGCG-CGg -3'
miRNA:   3'- -GCaCCUGGGCCGgaUgUGGUUGUuGU- -5'
29082 3' -55.1 NC_006146.1 + 76280 0.66 0.954163
Target:  5'- -aUGGACCCGGCCcagUACGugGGCugGACGc -3'
miRNA:   3'- gcACCUGGGCCGG---AUGUggUUG--UUGU- -5'
29082 3' -55.1 NC_006146.1 + 129922 0.66 0.950131
Target:  5'- --gGGGCgCCGGCgCgGCACCA-CGGCGg -3'
miRNA:   3'- gcaCCUG-GGCCG-GaUGUGGUuGUUGU- -5'
29082 3' -55.1 NC_006146.1 + 304 0.66 0.950131
Target:  5'- --cGGGCCCGGCgCgcuCGCCAcgccCAGCu -3'
miRNA:   3'- gcaCCUGGGCCG-Gau-GUGGUu---GUUGu -5'
29082 3' -55.1 NC_006146.1 + 143947 0.66 0.950131
Target:  5'- cCG-GGuaauGCCCGGUCgcuUACGCCGACcGCGu -3'
miRNA:   3'- -GCaCC----UGGGCCGG---AUGUGGUUGuUGU- -5'
29082 3' -55.1 NC_006146.1 + 92240 0.66 0.950131
Target:  5'- --cGGGCCCGGCCUgugGCugCuGCu--- -3'
miRNA:   3'- gcaCCUGGGCCGGA---UGugGuUGuugu -5'
29082 3' -55.1 NC_006146.1 + 71533 0.66 0.945869
Target:  5'- -cUGGGCCucaacgcgCGGCCcggGCGCCGACGcuuGCGa -3'
miRNA:   3'- gcACCUGG--------GCCGGa--UGUGGUUGU---UGU- -5'
29082 3' -55.1 NC_006146.1 + 137683 0.66 0.945869
Target:  5'- --cGGccACCCGGCUgccccggaGCACCAGgAGCAc -3'
miRNA:   3'- gcaCC--UGGGCCGGa-------UGUGGUUgUUGU- -5'
29082 3' -55.1 NC_006146.1 + 57859 0.66 0.945869
Target:  5'- aCGUGGACCCcgaGGCCgACGuCCuGCcgGGCGu -3'
miRNA:   3'- -GCACCUGGG---CCGGaUGU-GGuUG--UUGU- -5'
29082 3' -55.1 NC_006146.1 + 48756 0.66 0.945869
Target:  5'- -uUGcGCCCGGCCU---CCAGCAGCc -3'
miRNA:   3'- gcACcUGGGCCGGAuguGGUUGUUGu -5'
29082 3' -55.1 NC_006146.1 + 87379 0.66 0.945869
Target:  5'- uGUGGGCCCuGaucagaacCCUGCGCCAGgagaGGCAc -3'
miRNA:   3'- gCACCUGGGcC--------GGAUGUGGUUg---UUGU- -5'
29082 3' -55.1 NC_006146.1 + 83722 0.66 0.9432
Target:  5'- uGUaGGACCCuGGCCaaaaacaacccccugUGgGCCGugAGCAg -3'
miRNA:   3'- gCA-CCUGGG-CCGG---------------AUgUGGUugUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.