miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 113699 0.66 0.758905
Target:  5'- cUCCGGCccggggaCGGCGgcgGCaGCCGgGACg -3'
miRNA:   3'- -AGGCCGug-----GCCGUaa-CGgCGGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 142672 0.66 0.730825
Target:  5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3'
miRNA:   3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 7296 0.66 0.730825
Target:  5'- uUCCGGgGagaggccucaacUgGGCAUUGCCcauGCCaGUGACu -3'
miRNA:   3'- -AGGCCgU------------GgCCGUAACGG---CGG-CACUG- -5'
29082 5' -60.5 NC_006146.1 + 23445 0.66 0.729875
Target:  5'- cUCCGGCugCccgucucGGCcuacgagGCCcugGCCGUGGCc -3'
miRNA:   3'- -AGGCCGugG-------CCGuaa----CGG---CGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 24121 0.66 0.721294
Target:  5'- gCUGGCACCgGGCcuguaccUGUCGC-GUGACu -3'
miRNA:   3'- aGGCCGUGG-CCGua-----ACGGCGgCACUG- -5'
29082 5' -60.5 NC_006146.1 + 35674 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 35581 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 35488 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 35395 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 145749 0.66 0.730825
Target:  5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3'
miRNA:   3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 148827 0.66 0.730825
Target:  5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3'
miRNA:   3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 151905 0.66 0.730825
Target:  5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3'
miRNA:   3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 61595 0.66 0.758905
Target:  5'- gCCGGCugCaGCGgccGCgGCCGgGGCc -3'
miRNA:   3'- aGGCCGugGcCGUaa-CGgCGGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 110814 0.66 0.749639
Target:  5'- aCCGGC-CCGGCgAUUGCCcguaGCUccacggGACg -3'
miRNA:   3'- aGGCCGuGGCCG-UAACGG----CGGca----CUG- -5'
29082 5' -60.5 NC_006146.1 + 61308 0.66 0.749639
Target:  5'- -gCGGCGCgCGGCGUccUGCCcggguggccuaGCCGgcgaGGCa -3'
miRNA:   3'- agGCCGUG-GCCGUA--ACGG-----------CGGCa---CUG- -5'
29082 5' -60.5 NC_006146.1 + 123367 0.66 0.740276
Target:  5'- cUCUGGCGCUGGCcggggGCC-CCGcaaccUGGCu -3'
miRNA:   3'- -AGGCCGUGGCCGuaa--CGGcGGC-----ACUG- -5'
29082 5' -60.5 NC_006146.1 + 137662 0.66 0.730825
Target:  5'- -gCGGC-CCGGCGgacCCGCCGgcGGCc -3'
miRNA:   3'- agGCCGuGGCCGUaacGGCGGCa-CUG- -5'
29082 5' -60.5 NC_006146.1 + 92244 0.66 0.730825
Target:  5'- cCCGGcCugUGGC--UGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCC-GugGCCGuaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 158062 0.66 0.730825
Target:  5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3'
miRNA:   3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 154983 0.66 0.730825
Target:  5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3'
miRNA:   3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.