miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 35116 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 35209 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 35302 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 35395 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 35488 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 35581 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 7296 0.66 0.730825
Target:  5'- uUCCGGgGagaggccucaacUgGGCAUUGCCcauGCCaGUGACu -3'
miRNA:   3'- -AGGCCgU------------GgCCGUAACGG---CGG-CACUG- -5'
29082 5' -60.5 NC_006146.1 + 23445 0.66 0.729875
Target:  5'- cUCCGGCugCccgucucGGCcuacgagGCCcugGCCGUGGCc -3'
miRNA:   3'- -AGGCCGugG-------CCGuaa----CGG---CGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 24121 0.66 0.721294
Target:  5'- gCUGGCACCgGGCcuguaccUGUCGC-GUGACu -3'
miRNA:   3'- aGGCCGUGG-CCGua-----ACGGCGgCACUG- -5'
29082 5' -60.5 NC_006146.1 + 35674 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 92154 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 46972 0.67 0.653039
Target:  5'- gCCGGC-CCGGCc--GCCGCCa---- -3'
miRNA:   3'- aGGCCGuGGCCGuaaCGGCGGcacug -5'
29082 5' -60.5 NC_006146.1 + 43323 0.67 0.653039
Target:  5'- gCCGGCG-CGGCcucgGCCGCCcagGGCc -3'
miRNA:   3'- aGGCCGUgGCCGuaa-CGGCGGca-CUG- -5'
29082 5' -60.5 NC_006146.1 + 109689 0.67 0.652052
Target:  5'- gUCCGGUACCcgaucggGGCAgagcuCCGCCaUGACc -3'
miRNA:   3'- -AGGCCGUGG-------CCGUaac--GGCGGcACUG- -5'
29082 5' -60.5 NC_006146.1 + 115215 0.67 0.662898
Target:  5'- cCCGGCGgCGGCcgUGCcCGUgcUGGCc -3'
miRNA:   3'- aGGCCGUgGCCGuaACG-GCGgcACUG- -5'
29082 5' -60.5 NC_006146.1 + 114232 0.67 0.662898
Target:  5'- cCCGGCGauCCGGCGUUGCagaCGgCGgcgaucGACg -3'
miRNA:   3'- aGGCCGU--GGCCGUAACG---GCgGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 165645 0.67 0.662898
Target:  5'- cCCGGCuCgGGCGUUGgguCCGUGACc -3'
miRNA:   3'- aGGCCGuGgCCGUAACggcGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 92005 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92035 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 33909 0.67 0.692307
Target:  5'- cCCGGCAgCGGCccgGCCacccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG------CGGCa-----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.