miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 45112 0.68 0.603654
Target:  5'- cUCCGGC-UCGGCcggUGaCCGCCGgGAg -3'
miRNA:   3'- -AGGCCGuGGCCGua-AC-GGCGGCaCUg -5'
29082 5' -60.5 NC_006146.1 + 170103 0.68 0.613518
Target:  5'- gCCGGCGCC-GCAggggggGCCGgCGgGGCg -3'
miRNA:   3'- aGGCCGUGGcCGUaa----CGGCgGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 96027 0.68 0.613518
Target:  5'- aUCUGuGcCACCGGCAUggUGCCgGCCGUc-- -3'
miRNA:   3'- -AGGC-C-GUGGCCGUA--ACGG-CGGCAcug -5'
29082 5' -60.5 NC_006146.1 + 92035 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92005 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 42707 0.67 0.672735
Target:  5'- cCCGGCGCCgcGGCGccccccuggGCCGCCucccGGCg -3'
miRNA:   3'- aGGCCGUGG--CCGUaa-------CGGCGGca--CUG- -5'
29082 5' -60.5 NC_006146.1 + 165645 0.67 0.662898
Target:  5'- cCCGGCuCgGGCGUUGgguCCGUGACc -3'
miRNA:   3'- aGGCCGuGgCCGUAACggcGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 114232 0.67 0.662898
Target:  5'- cCCGGCGauCCGGCGUUGCagaCGgCGgcgaucGACg -3'
miRNA:   3'- aGGCCGU--GGCCGUAACG---GCgGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 115215 0.67 0.662898
Target:  5'- cCCGGCGgCGGCcgUGCcCGUgcUGGCc -3'
miRNA:   3'- aGGCCGUgGCCGuaACG-GCGgcACUG- -5'
29082 5' -60.5 NC_006146.1 + 92065 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92094 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 33909 0.67 0.692307
Target:  5'- cCCGGCAgCGGCccgGCCacccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34930 0.67 0.691332
Target:  5'- aCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 814 0.67 0.68254
Target:  5'- -gCGGCGCCGGCcccucCCGCCGg--- -3'
miRNA:   3'- agGCCGUGGCCGuaac-GGCGGCacug -5'
29082 5' -60.5 NC_006146.1 + 92304 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92274 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92214 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92154 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92124 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92184 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.