miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 111216 1.09 0.00128
Target:  5'- cUCCGGCACCGGCAUUGCCGCCGUGACu -3'
miRNA:   3'- -AGGCCGUGGCCGUAACGGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 6878 0.75 0.264752
Target:  5'- cCCGGUGCUauuuuuGGCcaacaagGCCGCCGUGACg -3'
miRNA:   3'- aGGCCGUGG------CCGuaa----CGGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 755 0.74 0.289967
Target:  5'- gCCGGCGCCGccgcGCGUgcaGCCGagCGUGACg -3'
miRNA:   3'- aGGCCGUGGC----CGUAa--CGGCg-GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 3550 0.74 0.289967
Target:  5'- gCCGGCGCCGccgcGCGUgcaGCCGagCGUGACg -3'
miRNA:   3'- aGGCCGUGGC----CGUAa--CGGCg-GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 2618 0.74 0.289967
Target:  5'- gCCGGCGCCGccgcGCGUgcaGCCGagCGUGACg -3'
miRNA:   3'- aGGCCGUGGC----CGUAa--CGGCg-GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 1686 0.74 0.289967
Target:  5'- gCCGGCGCCGccgcGCGUgcaGCCGagCGUGACg -3'
miRNA:   3'- aGGCCGUGGC----CGUAa--CGGCg-GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 159916 0.74 0.29259
Target:  5'- cCCGuCACCGGCAgcGCCGCCugcuuuaggugcacuGUGGCa -3'
miRNA:   3'- aGGCcGUGGCCGUaaCGGCGG---------------CACUG- -5'
29082 5' -60.5 NC_006146.1 + 62080 0.74 0.324083
Target:  5'- aCCGGU-CCGGCAUUauaGCCGUGGCg -3'
miRNA:   3'- aGGCCGuGGCCGUAAcggCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 4537 0.73 0.3611
Target:  5'- cUCGGUGCCGGCA--GCCGCCGa--- -3'
miRNA:   3'- aGGCCGUGGCCGUaaCGGCGGCacug -5'
29082 5' -60.5 NC_006146.1 + 17416 0.72 0.384682
Target:  5'- -aCGGCAgCGGcCAUUGUgCGCCGUcGACg -3'
miRNA:   3'- agGCCGUgGCC-GUAACG-GCGGCA-CUG- -5'
29082 5' -60.5 NC_006146.1 + 55686 0.71 0.426183
Target:  5'- gCCaGCACgGGCAcgGCCGCCGccggggGGCu -3'
miRNA:   3'- aGGcCGUGgCCGUaaCGGCGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 120800 0.71 0.442636
Target:  5'- gCCGGUccgcgugGCCGGaCAagcgggGCCGCCGUGgACg -3'
miRNA:   3'- aGGCCG-------UGGCC-GUaa----CGGCGGCAC-UG- -5'
29082 5' -60.5 NC_006146.1 + 42624 0.71 0.470231
Target:  5'- cCUGGgGCuCGGCc--GCCGCCGUGGg -3'
miRNA:   3'- aGGCCgUG-GCCGuaaCGGCGGCACUg -5'
29082 5' -60.5 NC_006146.1 + 169171 0.7 0.479318
Target:  5'- gCCGGCGCCuGCAggggggGCCGgCGgGGCg -3'
miRNA:   3'- aGGCCGUGGcCGUaa----CGGCgGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 168239 0.7 0.479318
Target:  5'- gCCGGCGCCuGCAggggggGCCGgCGgGGCg -3'
miRNA:   3'- aGGCCGUGGcCGUaa----CGGCgGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 41349 0.7 0.479318
Target:  5'- aUCUGGCccaggGCCuGGCGgugGUgGCCGUGGCu -3'
miRNA:   3'- -AGGCCG-----UGG-CCGUaa-CGgCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 167307 0.7 0.479318
Target:  5'- gCCGGCGCCuGCAggggggGCCGgCGgGGCg -3'
miRNA:   3'- aGGCCGUGGcCGUaa----CGGCgGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 122805 0.7 0.479318
Target:  5'- -gCGGCcgagGCCGcGCugucgGCCGCCGUGAg -3'
miRNA:   3'- agGCCG----UGGC-CGuaa--CGGCGGCACUg -5'
29082 5' -60.5 NC_006146.1 + 9654 0.7 0.507077
Target:  5'- -gCGGCACaGGUAgcUGCCGUCGUGGg -3'
miRNA:   3'- agGCCGUGgCCGUa-ACGGCGGCACUg -5'
29082 5' -60.5 NC_006146.1 + 119934 0.7 0.516482
Target:  5'- gUUGGCAgCGGCGcUGCUGCCG-GAg -3'
miRNA:   3'- aGGCCGUgGCCGUaACGGCGGCaCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.