miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 5107 0.7 0.516482
Target:  5'- cCCcuaGCCGGCcgUGCCaCCGUGGCu -3'
miRNA:   3'- aGGccgUGGCCGuaACGGcGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 54016 0.7 0.525957
Target:  5'- gCCGGCACCaGGUGgcGCCuCCGgagGGCg -3'
miRNA:   3'- aGGCCGUGG-CCGUaaCGGcGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92981 0.7 0.525957
Target:  5'- cCCGGCACCuGCGagGCCGCCc---- -3'
miRNA:   3'- aGGCCGUGGcCGUaaCGGCGGcacug -5'
29082 5' -60.5 NC_006146.1 + 84500 0.7 0.529765
Target:  5'- uUCUGGCugUGGUGUuuuccucggacgucgUGCCgguacaggcGCCGUGGCa -3'
miRNA:   3'- -AGGCCGugGCCGUA---------------ACGG---------CGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 57369 0.69 0.535496
Target:  5'- --aGGCugCGGCggUGgCGCCGgugGGCu -3'
miRNA:   3'- aggCCGugGCCGuaACgGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 127419 0.69 0.545096
Target:  5'- gCCGGaGCCGGUGUcaacgGCCGCCGaggaGGCu -3'
miRNA:   3'- aGGCCgUGGCCGUAa----CGGCGGCa---CUG- -5'
29082 5' -60.5 NC_006146.1 + 158090 0.69 0.545096
Target:  5'- -aUGcGCACCGGCA--GCCGCCGUc-- -3'
miRNA:   3'- agGC-CGUGGCCGUaaCGGCGGCAcug -5'
29082 5' -60.5 NC_006146.1 + 119247 0.69 0.55475
Target:  5'- cCCGGCACCGGCccugGCC-CCcUGGg -3'
miRNA:   3'- aGGCCGUGGCCGuaa-CGGcGGcACUg -5'
29082 5' -60.5 NC_006146.1 + 151921 0.69 0.564455
Target:  5'- gUCUGGCuCCGGCccUGCCGCCcucucuaggGGCc -3'
miRNA:   3'- -AGGCCGuGGCCGuaACGGCGGca-------CUG- -5'
29082 5' -60.5 NC_006146.1 + 99055 0.69 0.574203
Target:  5'- cCCGGCGggugUCGGCggUGCCGuaGUGGu -3'
miRNA:   3'- aGGCCGU----GGCCGuaACGGCggCACUg -5'
29082 5' -60.5 NC_006146.1 + 3121 0.69 0.583989
Target:  5'- aUCCGGCACCGuGCGUcucgagccaUGCgCGCCcacccGGCc -3'
miRNA:   3'- -AGGCCGUGGC-CGUA---------ACG-GCGGca---CUG- -5'
29082 5' -60.5 NC_006146.1 + 52966 0.69 0.58497
Target:  5'- gCCGGagaagGCCGGUAgugcgcaggcggaccUGCCgGCCGUGGCc -3'
miRNA:   3'- aGGCCg----UGGCCGUa--------------ACGG-CGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 64651 0.68 0.593809
Target:  5'- gCCGGgGCCaggGGCAc-GUCGCCGUGGu -3'
miRNA:   3'- aGGCCgUGG---CCGUaaCGGCGGCACUg -5'
29082 5' -60.5 NC_006146.1 + 168053 0.68 0.593809
Target:  5'- gCCGGCcacaACCGGCAcc-CCGCuccuggCGUGACa -3'
miRNA:   3'- aGGCCG----UGGCCGUaacGGCG------GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 114314 0.68 0.593809
Target:  5'- aCCGGCGgcgggcUCGGCGcccgGCCGCCccUGACg -3'
miRNA:   3'- aGGCCGU------GGCCGUaa--CGGCGGc-ACUG- -5'
29082 5' -60.5 NC_006146.1 + 45112 0.68 0.603654
Target:  5'- cUCCGGC-UCGGCcggUGaCCGCCGgGAg -3'
miRNA:   3'- -AGGCCGuGGCCGua-AC-GGCGGCaCUg -5'
29082 5' -60.5 NC_006146.1 + 127856 0.68 0.613518
Target:  5'- cUUgGGCAgCCGGCGUgccauaCCGCgCGUGAUa -3'
miRNA:   3'- -AGgCCGU-GGCCGUAac----GGCG-GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 33233 0.68 0.613518
Target:  5'- gCCGGguggcCGCCGGCGgguCCGCCG-GGCc -3'
miRNA:   3'- aGGCC-----GUGGCCGUaacGGCGGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 106478 0.68 0.613518
Target:  5'- cCUGGCAgCGuac--GCCGCCGUGGCc -3'
miRNA:   3'- aGGCCGUgGCcguaaCGGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 96027 0.68 0.613518
Target:  5'- aUCUGuGcCACCGGCAUggUGCCgGCCGUc-- -3'
miRNA:   3'- -AGGC-C-GUGGCCGUA--ACGG-CGGCAcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.