Results 21 - 40 of 123 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 148827 | 0.66 | 0.730825 |
Target: 5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3' miRNA: 3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 151905 | 0.66 | 0.730825 |
Target: 5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3' miRNA: 3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 23445 | 0.66 | 0.729875 |
Target: 5'- cUCCGGCugCccgucucGGCcuacgagGCCcugGCCGUGGCc -3' miRNA: 3'- -AGGCCGugG-------CCGuaa----CGG---CGGCACUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 24121 | 0.66 | 0.721294 |
Target: 5'- gCUGGCACCgGGCcuguaccUGUCGC-GUGACu -3' miRNA: 3'- aGGCCGUGG-CCGua-----ACGGCGgCACUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 66496 | 0.66 | 0.721294 |
Target: 5'- -gCGGCAgCCGGaugcaccgGCCGgCGUGAUa -3' miRNA: 3'- agGCCGU-GGCCguaa----CGGCgGCACUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 33345 | 0.66 | 0.711692 |
Target: 5'- cUCCGGggcaGCCGGgug-GCCGCCGgUGGg -3' miRNA: 3'- -AGGCCg---UGGCCguaaCGGCGGC-ACUg -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 34745 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 33351 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 33444 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 35581 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 35395 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 35302 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 35209 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 35116 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 35023 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 34838 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 34373 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 34466 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 34559 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
|||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 34652 | 0.66 | 0.710728 |
Target: 5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3' miRNA: 3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home