miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 35488 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 35581 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 35674 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34838 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34745 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34187 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34373 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34466 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34559 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34652 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 94045 0.67 0.7059
Target:  5'- cCCGaGCGCCGccGCGUaucccucguUuuuacagagagaaugGCCGCCGUGGCu -3'
miRNA:   3'- aGGC-CGUGGC--CGUA---------A---------------CGGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 63309 0.67 0.702027
Target:  5'- -aUGGcCACCcucuGCAUucUGaCCGCCGUGGCg -3'
miRNA:   3'- agGCC-GUGGc---CGUA--AC-GGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 77298 0.67 0.702027
Target:  5'- gCCGGUACCGuaA-UGCCGCCcaGAa -3'
miRNA:   3'- aGGCCGUGGCcgUaACGGCGGcaCUg -5'
29082 5' -60.5 NC_006146.1 + 44695 0.67 0.702027
Target:  5'- gCCGGUguGgCGGCg--GUgGCCGUGGCc -3'
miRNA:   3'- aGGCCG--UgGCCGuaaCGgCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 136709 0.67 0.702027
Target:  5'- cUCCGGCggggggugGCCGGCc--GCUGCCGg--- -3'
miRNA:   3'- -AGGCCG--------UGGCCGuaaCGGCGGCacug -5'
29082 5' -60.5 NC_006146.1 + 150436 0.67 0.692307
Target:  5'- aCCaGCACCGGggaGUUGUagaaGCCG-GACa -3'
miRNA:   3'- aGGcCGUGGCCg--UAACGg---CGGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 33909 0.67 0.692307
Target:  5'- cCCGGCAgCGGCccgGCCacccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34930 0.67 0.691332
Target:  5'- aCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 814 0.67 0.68254
Target:  5'- -gCGGCGCCGGCcccucCCGCCGg--- -3'
miRNA:   3'- agGCCGUGGCCGuaac-GGCGGCacug -5'
29082 5' -60.5 NC_006146.1 + 53507 0.67 0.672735
Target:  5'- gUCUGGCuCUGGCugcggGCCGCgCGUGu- -3'
miRNA:   3'- -AGGCCGuGGCCGuaa--CGGCG-GCACug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.