Results 61 - 80 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29082 | 5' | -60.5 | NC_006146.1 | + | 92214 | 0.67 | 0.672735 |
Target: 5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3' miRNA: 3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 92304 | 0.67 | 0.672735 |
Target: 5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3' miRNA: 3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 92274 | 0.67 | 0.672735 |
Target: 5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3' miRNA: 3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 92184 | 0.67 | 0.672735 |
Target: 5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3' miRNA: 3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 92154 | 0.67 | 0.672735 |
Target: 5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3' miRNA: 3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 92124 | 0.67 | 0.672735 |
Target: 5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3' miRNA: 3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 92094 | 0.67 | 0.672735 |
Target: 5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3' miRNA: 3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 92065 | 0.67 | 0.672735 |
Target: 5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3' miRNA: 3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 92035 | 0.67 | 0.672735 |
Target: 5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3' miRNA: 3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 42707 | 0.67 | 0.672735 |
Target: 5'- cCCGGCGCCgcGGCGccccccuggGCCGCCucccGGCg -3' miRNA: 3'- aGGCCGUGG--CCGUaa-------CGGCGGca--CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 92005 | 0.67 | 0.672735 |
Target: 5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3' miRNA: 3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 50107 | 0.67 | 0.671752 |
Target: 5'- gUCCGGCcacgcggACCGGCGaccuCCGCCaggGACa -3' miRNA: 3'- -AGGCCG-------UGGCCGUaac-GGCGGca-CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 115215 | 0.67 | 0.662898 |
Target: 5'- cCCGGCGgCGGCcgUGCcCGUgcUGGCc -3' miRNA: 3'- aGGCCGUgGCCGuaACG-GCGgcACUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 114232 | 0.67 | 0.662898 |
Target: 5'- cCCGGCGauCCGGCGUUGCagaCGgCGgcgaucGACg -3' miRNA: 3'- aGGCCGU--GGCCGUAACG---GCgGCa-----CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 165645 | 0.67 | 0.662898 |
Target: 5'- cCCGGCuCgGGCGUUGgguCCGUGACc -3' miRNA: 3'- aGGCCGuGgCCGUAACggcGGCACUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 41688 | 0.67 | 0.661913 |
Target: 5'- gCUGGCucuuucagcgcucACCGGCGgggggUGCggCGCUGUGGCc -3' miRNA: 3'- aGGCCG-------------UGGCCGUa----ACG--GCGGCACUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 43323 | 0.67 | 0.653039 |
Target: 5'- gCCGGCG-CGGCcucgGCCGCCcagGGCc -3' miRNA: 3'- aGGCCGUgGCCGuaa-CGGCGGca-CUG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 132754 | 0.67 | 0.653039 |
Target: 5'- cUCCGGgGCCGGa--UGCCGCgGUcccGCa -3' miRNA: 3'- -AGGCCgUGGCCguaACGGCGgCAc--UG- -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 46972 | 0.67 | 0.653039 |
Target: 5'- gCCGGC-CCGGCc--GCCGCCa---- -3' miRNA: 3'- aGGCCGuGGCCGuaaCGGCGGcacug -5' |
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29082 | 5' | -60.5 | NC_006146.1 | + | 109689 | 0.67 | 0.652052 |
Target: 5'- gUCCGGUACCcgaucggGGCAgagcuCCGCCaUGACc -3' miRNA: 3'- -AGGCCGUGG-------CCGUaac--GGCGGcACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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