miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 755 0.74 0.289967
Target:  5'- gCCGGCGCCGccgcGCGUgcaGCCGagCGUGACg -3'
miRNA:   3'- aGGCCGUGGC----CGUAa--CGGCg-GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 814 0.67 0.68254
Target:  5'- -gCGGCGCCGGCcccucCCGCCGg--- -3'
miRNA:   3'- agGCCGUGGCCGuaac-GGCGGCacug -5'
29082 5' -60.5 NC_006146.1 + 1686 0.74 0.289967
Target:  5'- gCCGGCGCCGccgcGCGUgcaGCCGagCGUGACg -3'
miRNA:   3'- aGGCCGUGGC----CGUAa--CGGCg-GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 2618 0.74 0.289967
Target:  5'- gCCGGCGCCGccgcGCGUgcaGCCGagCGUGACg -3'
miRNA:   3'- aGGCCGUGGC----CGUAa--CGGCg-GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 3121 0.69 0.583989
Target:  5'- aUCCGGCACCGuGCGUcucgagccaUGCgCGCCcacccGGCc -3'
miRNA:   3'- -AGGCCGUGGC-CGUA---------ACG-GCGGca---CUG- -5'
29082 5' -60.5 NC_006146.1 + 3550 0.74 0.289967
Target:  5'- gCCGGCGCCGccgcGCGUgcaGCCGagCGUGACg -3'
miRNA:   3'- aGGCCGUGGC----CGUAa--CGGCg-GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 4537 0.73 0.3611
Target:  5'- cUCGGUGCCGGCA--GCCGCCGa--- -3'
miRNA:   3'- aGGCCGUGGCCGUaaCGGCGGCacug -5'
29082 5' -60.5 NC_006146.1 + 5107 0.7 0.516482
Target:  5'- cCCcuaGCCGGCcgUGCCaCCGUGGCu -3'
miRNA:   3'- aGGccgUGGCCGuaACGGcGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 6878 0.75 0.264752
Target:  5'- cCCGGUGCUauuuuuGGCcaacaagGCCGCCGUGACg -3'
miRNA:   3'- aGGCCGUGG------CCGuaa----CGGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 7296 0.66 0.730825
Target:  5'- uUCCGGgGagaggccucaacUgGGCAUUGCCcauGCCaGUGACu -3'
miRNA:   3'- -AGGCCgU------------GgCCGUAACGG---CGG-CACUG- -5'
29082 5' -60.5 NC_006146.1 + 9654 0.7 0.507077
Target:  5'- -gCGGCACaGGUAgcUGCCGUCGUGGg -3'
miRNA:   3'- agGCCGUGgCCGUa-ACGGCGGCACUg -5'
29082 5' -60.5 NC_006146.1 + 17416 0.72 0.384682
Target:  5'- -aCGGCAgCGGcCAUUGUgCGCCGUcGACg -3'
miRNA:   3'- agGCCGUgGCC-GUAACG-GCGGCA-CUG- -5'
29082 5' -60.5 NC_006146.1 + 23445 0.66 0.729875
Target:  5'- cUCCGGCugCccgucucGGCcuacgagGCCcugGCCGUGGCc -3'
miRNA:   3'- -AGGCCGugG-------CCGuaa----CGG---CGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 24121 0.66 0.721294
Target:  5'- gCUGGCACCgGGCcuguaccUGUCGC-GUGACu -3'
miRNA:   3'- aGGCCGUGG-CCGua-----ACGGCGgCACUG- -5'
29082 5' -60.5 NC_006146.1 + 33233 0.68 0.613518
Target:  5'- gCCGGguggcCGCCGGCGgguCCGCCG-GGCc -3'
miRNA:   3'- aGGCC-----GUGGCCGUaacGGCGGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 33345 0.66 0.711692
Target:  5'- cUCCGGggcaGCCGGgug-GCCGCCGgUGGg -3'
miRNA:   3'- -AGGCCg---UGGCCguaaCGGCGGC-ACUg -5'
29082 5' -60.5 NC_006146.1 + 33351 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 33444 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 33537 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 33630 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.