miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 35581 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 35674 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 39826 0.68 0.623396
Target:  5'- -aCGGC-CCGGCGgccucgGCCGCacaGUGGg -3'
miRNA:   3'- agGCCGuGGCCGUaa----CGGCGg--CACUg -5'
29082 5' -60.5 NC_006146.1 + 41349 0.7 0.479318
Target:  5'- aUCUGGCccaggGCCuGGCGgugGUgGCCGUGGCu -3'
miRNA:   3'- -AGGCCG-----UGG-CCGUaa-CGgCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 41688 0.67 0.661913
Target:  5'- gCUGGCucuuucagcgcucACCGGCGgggggUGCggCGCUGUGGCc -3'
miRNA:   3'- aGGCCG-------------UGGCCGUa----ACG--GCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 42624 0.71 0.470231
Target:  5'- cCUGGgGCuCGGCc--GCCGCCGUGGg -3'
miRNA:   3'- aGGCCgUG-GCCGuaaCGGCGGCACUg -5'
29082 5' -60.5 NC_006146.1 + 42707 0.67 0.672735
Target:  5'- cCCGGCGCCgcGGCGccccccuggGCCGCCucccGGCg -3'
miRNA:   3'- aGGCCGUGG--CCGUaa-------CGGCGGca--CUG- -5'
29082 5' -60.5 NC_006146.1 + 43323 0.67 0.653039
Target:  5'- gCCGGCG-CGGCcucgGCCGCCcagGGCc -3'
miRNA:   3'- aGGCCGUgGCCGuaa-CGGCGGca-CUG- -5'
29082 5' -60.5 NC_006146.1 + 43497 0.66 0.749639
Target:  5'- aCCGGCuCCGGCGgcgggGCCcaGCCccaaGACa -3'
miRNA:   3'- aGGCCGuGGCCGUaa---CGG--CGGca--CUG- -5'
29082 5' -60.5 NC_006146.1 + 44695 0.67 0.702027
Target:  5'- gCCGGUguGgCGGCg--GUgGCCGUGGCc -3'
miRNA:   3'- aGGCCG--UgGCCGuaaCGgCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 45112 0.68 0.603654
Target:  5'- cUCCGGC-UCGGCcggUGaCCGCCGgGAg -3'
miRNA:   3'- -AGGCCGuGGCCGua-AC-GGCGGCaCUg -5'
29082 5' -60.5 NC_006146.1 + 46972 0.67 0.653039
Target:  5'- gCCGGC-CCGGCc--GCCGCCa---- -3'
miRNA:   3'- aGGCCGuGGCCGuaaCGGCGGcacug -5'
29082 5' -60.5 NC_006146.1 + 50107 0.67 0.671752
Target:  5'- gUCCGGCcacgcggACCGGCGaccuCCGCCaggGACa -3'
miRNA:   3'- -AGGCCG-------UGGCCGUaac-GGCGGca-CUG- -5'
29082 5' -60.5 NC_006146.1 + 52966 0.69 0.58497
Target:  5'- gCCGGagaagGCCGGUAgugcgcaggcggaccUGCCgGCCGUGGCc -3'
miRNA:   3'- aGGCCg----UGGCCGUa--------------ACGG-CGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 53507 0.67 0.672735
Target:  5'- gUCUGGCuCUGGCugcggGCCGCgCGUGu- -3'
miRNA:   3'- -AGGCCGuGGCCGuaa--CGGCG-GCACug -5'
29082 5' -60.5 NC_006146.1 + 54016 0.7 0.525957
Target:  5'- gCCGGCACCaGGUGgcGCCuCCGgagGGCg -3'
miRNA:   3'- aGGCCGUGG-CCGUaaCGGcGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 55686 0.71 0.426183
Target:  5'- gCCaGCACgGGCAcgGCCGCCGccggggGGCu -3'
miRNA:   3'- aGGcCGUGgCCGUaaCGGCGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 56589 0.66 0.730825
Target:  5'- gCCgGGCGCCGaGCcc-GCCGCCGg--- -3'
miRNA:   3'- aGG-CCGUGGC-CGuaaCGGCGGCacug -5'
29082 5' -60.5 NC_006146.1 + 57369 0.69 0.535496
Target:  5'- --aGGCugCGGCggUGgCGCCGgugGGCu -3'
miRNA:   3'- aggCCGugGCCGuaACgGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 61308 0.66 0.749639
Target:  5'- -gCGGCGCgCGGCGUccUGCCcggguggccuaGCCGgcgaGGCa -3'
miRNA:   3'- agGCCGUG-GCCGUA--ACGG-----------CGGCa---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.