miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 170103 0.68 0.613518
Target:  5'- gCCGGCGCC-GCAggggggGCCGgCGgGGCg -3'
miRNA:   3'- aGGCCGUGGcCGUaa----CGGCgGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 169171 0.7 0.479318
Target:  5'- gCCGGCGCCuGCAggggggGCCGgCGgGGCg -3'
miRNA:   3'- aGGCCGUGGcCGUaa----CGGCgGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 168239 0.7 0.479318
Target:  5'- gCCGGCGCCuGCAggggggGCCGgCGgGGCg -3'
miRNA:   3'- aGGCCGUGGcCGUaa----CGGCgGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 168053 0.68 0.593809
Target:  5'- gCCGGCcacaACCGGCAcc-CCGCuccuggCGUGACa -3'
miRNA:   3'- aGGCCG----UGGCCGUaacGGCG------GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 167307 0.7 0.479318
Target:  5'- gCCGGCGCCuGCAggggggGCCGgCGgGGCg -3'
miRNA:   3'- aGGCCGUGGcCGUaa----CGGCgGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 165645 0.67 0.662898
Target:  5'- cCCGGCuCgGGCGUUGgguCCGUGACc -3'
miRNA:   3'- aGGCCGuGgCCGUAACggcGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 159916 0.74 0.29259
Target:  5'- cCCGuCACCGGCAgcGCCGCCugcuuuaggugcacuGUGGCa -3'
miRNA:   3'- aGGCcGUGGCCGUaaCGGCGG---------------CACUG- -5'
29082 5' -60.5 NC_006146.1 + 158090 0.69 0.545096
Target:  5'- -aUGcGCACCGGCA--GCCGCCGUc-- -3'
miRNA:   3'- agGC-CGUGGCCGUaaCGGCGGCAcug -5'
29082 5' -60.5 NC_006146.1 + 158062 0.66 0.730825
Target:  5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3'
miRNA:   3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 154983 0.66 0.730825
Target:  5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3'
miRNA:   3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 151921 0.69 0.564455
Target:  5'- gUCUGGCuCCGGCccUGCCGCCcucucuaggGGCc -3'
miRNA:   3'- -AGGCCGuGGCCGuaACGGCGGca-------CUG- -5'
29082 5' -60.5 NC_006146.1 + 151905 0.66 0.730825
Target:  5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3'
miRNA:   3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 150436 0.67 0.692307
Target:  5'- aCCaGCACCGGggaGUUGUagaaGCCG-GACa -3'
miRNA:   3'- aGGcCGUGGCCg--UAACGg---CGGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 148827 0.66 0.730825
Target:  5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3'
miRNA:   3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 145749 0.66 0.730825
Target:  5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3'
miRNA:   3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 142672 0.66 0.730825
Target:  5'- cCCaGGCGCCuccucgGGUccgGCCGCCGgagGGCu -3'
miRNA:   3'- aGG-CCGUGG------CCGuaaCGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 137884 0.66 0.749639
Target:  5'- cCCGG-GCCGGCAggggGUCcCCGUGgACa -3'
miRNA:   3'- aGGCCgUGGCCGUaa--CGGcGGCAC-UG- -5'
29082 5' -60.5 NC_006146.1 + 137662 0.66 0.730825
Target:  5'- -gCGGC-CCGGCGgacCCGCCGgcGGCc -3'
miRNA:   3'- agGCCGuGGCCGUaacGGCGGCa-CUG- -5'
29082 5' -60.5 NC_006146.1 + 136709 0.67 0.702027
Target:  5'- cUCCGGCggggggugGCCGGCc--GCUGCCGg--- -3'
miRNA:   3'- -AGGCCG--------UGGCCGuaaCGGCGGCacug -5'
29082 5' -60.5 NC_006146.1 + 132754 0.67 0.653039
Target:  5'- cUCCGGgGCCGGa--UGCCGCgGUcccGCa -3'
miRNA:   3'- -AGGCCgUGGCCguaACGGCGgCAc--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.