miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 131067 0.68 0.623396
Target:  5'- gCCGGCccACUGuGCGgccgagGCCGCCG-GGCc -3'
miRNA:   3'- aGGCCG--UGGC-CGUaa----CGGCGGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 127856 0.68 0.613518
Target:  5'- cUUgGGCAgCCGGCGUgccauaCCGCgCGUGAUa -3'
miRNA:   3'- -AGgCCGU-GGCCGUAac----GGCG-GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 127419 0.69 0.545096
Target:  5'- gCCGGaGCCGGUGUcaacgGCCGCCGaggaGGCu -3'
miRNA:   3'- aGGCCgUGGCCGUAa----CGGCGGCa---CUG- -5'
29082 5' -60.5 NC_006146.1 + 123367 0.66 0.740276
Target:  5'- cUCUGGCGCUGGCcggggGCC-CCGcaaccUGGCu -3'
miRNA:   3'- -AGGCCGUGGCCGuaa--CGGcGGC-----ACUG- -5'
29082 5' -60.5 NC_006146.1 + 122805 0.7 0.479318
Target:  5'- -gCGGCcgagGCCGcGCugucgGCCGCCGUGAg -3'
miRNA:   3'- agGCCG----UGGC-CGuaa--CGGCGGCACUg -5'
29082 5' -60.5 NC_006146.1 + 120800 0.71 0.442636
Target:  5'- gCCGGUccgcgugGCCGGaCAagcgggGCCGCCGUGgACg -3'
miRNA:   3'- aGGCCG-------UGGCC-GUaa----CGGCGGCAC-UG- -5'
29082 5' -60.5 NC_006146.1 + 119934 0.7 0.516482
Target:  5'- gUUGGCAgCGGCGcUGCUGCCG-GAg -3'
miRNA:   3'- aGGCCGUgGCCGUaACGGCGGCaCUg -5'
29082 5' -60.5 NC_006146.1 + 119247 0.69 0.55475
Target:  5'- cCCGGCACCGGCccugGCC-CCcUGGg -3'
miRNA:   3'- aGGCCGUGGCCGuaa-CGGcGGcACUg -5'
29082 5' -60.5 NC_006146.1 + 116950 0.66 0.749639
Target:  5'- cUCCuuGGUGauGGCAUUGuuGCCcauGUGACg -3'
miRNA:   3'- -AGG--CCGUggCCGUAACggCGG---CACUG- -5'
29082 5' -60.5 NC_006146.1 + 115215 0.67 0.662898
Target:  5'- cCCGGCGgCGGCcgUGCcCGUgcUGGCc -3'
miRNA:   3'- aGGCCGUgGCCGuaACG-GCGgcACUG- -5'
29082 5' -60.5 NC_006146.1 + 114314 0.68 0.593809
Target:  5'- aCCGGCGgcgggcUCGGCGcccgGCCGCCccUGACg -3'
miRNA:   3'- aGGCCGU------GGCCGUaa--CGGCGGc-ACUG- -5'
29082 5' -60.5 NC_006146.1 + 114232 0.67 0.662898
Target:  5'- cCCGGCGauCCGGCGUUGCagaCGgCGgcgaucGACg -3'
miRNA:   3'- aGGCCGU--GGCCGUAACG---GCgGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 113699 0.66 0.758905
Target:  5'- cUCCGGCccggggaCGGCGgcgGCaGCCGgGACg -3'
miRNA:   3'- -AGGCCGug-----GCCGUaa-CGgCGGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 111216 1.09 0.00128
Target:  5'- cUCCGGCACCGGCAUUGCCGCCGUGACu -3'
miRNA:   3'- -AGGCCGUGGCCGUAACGGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 110814 0.66 0.749639
Target:  5'- aCCGGC-CCGGCgAUUGCCcguaGCUccacggGACg -3'
miRNA:   3'- aGGCCGuGGCCG-UAACGG----CGGca----CUG- -5'
29082 5' -60.5 NC_006146.1 + 109689 0.67 0.652052
Target:  5'- gUCCGGUACCcgaucggGGCAgagcuCCGCCaUGACc -3'
miRNA:   3'- -AGGCCGUGG-------CCGUaac--GGCGGcACUG- -5'
29082 5' -60.5 NC_006146.1 + 109302 0.66 0.749639
Target:  5'- cUCGGCcCCGGCcgcgGCCGCUGcagccGGCu -3'
miRNA:   3'- aGGCCGuGGCCGuaa-CGGCGGCa----CUG- -5'
29082 5' -60.5 NC_006146.1 + 106478 0.68 0.613518
Target:  5'- cCUGGCAgCGuac--GCCGCCGUGGCc -3'
miRNA:   3'- aGGCCGUgGCcguaaCGGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 99055 0.69 0.574203
Target:  5'- cCCGGCGggugUCGGCggUGCCGuaGUGGu -3'
miRNA:   3'- aGGCCGU----GGCCGuaACGGCggCACUg -5'
29082 5' -60.5 NC_006146.1 + 96027 0.68 0.613518
Target:  5'- aUCUGuGcCACCGGCAUggUGCCgGCCGUc-- -3'
miRNA:   3'- -AGGC-C-GUGGCCGUA--ACGG-CGGCAcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.