miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 94045 0.67 0.7059
Target:  5'- cCCGaGCGCCGccGCGUaucccucguUuuuacagagagaaugGCCGCCGUGGCu -3'
miRNA:   3'- aGGC-CGUGGC--CGUA---------A---------------CGGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 92981 0.7 0.525957
Target:  5'- cCCGGCACCuGCGagGCCGCCc---- -3'
miRNA:   3'- aGGCCGUGGcCGUaaCGGCGGcacug -5'
29082 5' -60.5 NC_006146.1 + 92304 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92274 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92244 0.66 0.730825
Target:  5'- cCCGGcCugUGGC--UGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCC-GugGCCGuaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92214 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92184 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92154 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92124 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92094 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92065 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92035 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92005 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 89099 0.66 0.758905
Target:  5'- aCCGauGCuACCGGCAcUGCC-CCagGUGGCa -3'
miRNA:   3'- aGGC--CG-UGGCCGUaACGGcGG--CACUG- -5'
29082 5' -60.5 NC_006146.1 + 84500 0.7 0.529765
Target:  5'- uUCUGGCugUGGUGUuuuccucggacgucgUGCCgguacaggcGCCGUGGCa -3'
miRNA:   3'- -AGGCCGugGCCGUA---------------ACGG---------CGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 77298 0.67 0.702027
Target:  5'- gCCGGUACCGuaA-UGCCGCCcaGAa -3'
miRNA:   3'- aGGCCGUGGCcgUaACGGCGGcaCUg -5'
29082 5' -60.5 NC_006146.1 + 76870 0.66 0.758905
Target:  5'- -gCGGCGCUcggGGCcgUGCCccuGCCG-GGCc -3'
miRNA:   3'- agGCCGUGG---CCGuaACGG---CGGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 72563 0.66 0.730825
Target:  5'- aUgGGCGCCGGCGU-GgUGCUGgGGCu -3'
miRNA:   3'- aGgCCGUGGCCGUAaCgGCGGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 66496 0.66 0.721294
Target:  5'- -gCGGCAgCCGGaugcaccgGCCGgCGUGAUa -3'
miRNA:   3'- agGCCGU-GGCCguaa----CGGCgGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 64651 0.68 0.593809
Target:  5'- gCCGGgGCCaggGGCAc-GUCGCCGUGGu -3'
miRNA:   3'- aGGCCgUGG---CCGUaaCGGCGGCACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.