miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 111216 1.09 0.00128
Target:  5'- cUCCGGCACCGGCAUUGCCGCCGUGACu -3'
miRNA:   3'- -AGGCCGUGGCCGUAACGGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 151921 0.69 0.564455
Target:  5'- gUCUGGCuCCGGCccUGCCGCCcucucuaggGGCc -3'
miRNA:   3'- -AGGCCGuGGCCGuaACGGCGGca-------CUG- -5'
29082 5' -60.5 NC_006146.1 + 3121 0.69 0.583989
Target:  5'- aUCCGGCACCGuGCGUcucgagccaUGCgCGCCcacccGGCc -3'
miRNA:   3'- -AGGCCGUGGC-CGUA---------ACG-GCGGca---CUG- -5'
29082 5' -60.5 NC_006146.1 + 113699 0.66 0.758905
Target:  5'- cUCCGGCccggggaCGGCGgcgGCaGCCGgGACg -3'
miRNA:   3'- -AGGCCGug-----GCCGUaa-CGgCGGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 55686 0.71 0.426183
Target:  5'- gCCaGCACgGGCAcgGCCGCCGccggggGGCu -3'
miRNA:   3'- aGGcCGUGgCCGUaaCGGCGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 167307 0.7 0.479318
Target:  5'- gCCGGCGCCuGCAggggggGCCGgCGgGGCg -3'
miRNA:   3'- aGGCCGUGGcCGUaa----CGGCgGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 169171 0.7 0.479318
Target:  5'- gCCGGCGCCuGCAggggggGCCGgCGgGGCg -3'
miRNA:   3'- aGGCCGUGGcCGUaa----CGGCgGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 41349 0.7 0.479318
Target:  5'- aUCUGGCccaggGCCuGGCGgugGUgGCCGUGGCu -3'
miRNA:   3'- -AGGCCG-----UGG-CCGUaa-CGgCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 54016 0.7 0.525957
Target:  5'- gCCGGCACCaGGUGgcGCCuCCGgagGGCg -3'
miRNA:   3'- aGGCCGUGG-CCGUaaCGGcGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 119247 0.69 0.55475
Target:  5'- cCCGGCACCGGCccugGCC-CCcUGGg -3'
miRNA:   3'- aGGCCGUGGCCGuaa-CGGcGGcACUg -5'
29082 5' -60.5 NC_006146.1 + 84500 0.7 0.529765
Target:  5'- uUCUGGCugUGGUGUuuuccucggacgucgUGCCgguacaggcGCCGUGGCa -3'
miRNA:   3'- -AGGCCGugGCCGUA---------------ACGG---------CGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 5107 0.7 0.516482
Target:  5'- cCCcuaGCCGGCcgUGCCaCCGUGGCu -3'
miRNA:   3'- aGGccgUGGCCGuaACGGcGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 6878 0.75 0.264752
Target:  5'- cCCGGUGCUauuuuuGGCcaacaagGCCGCCGUGACg -3'
miRNA:   3'- aGGCCGUGG------CCGuaa----CGGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 57369 0.69 0.535496
Target:  5'- --aGGCugCGGCggUGgCGCCGgugGGCu -3'
miRNA:   3'- aggCCGugGCCGuaACgGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 62080 0.74 0.324083
Target:  5'- aCCGGU-CCGGCAUUauaGCCGUGGCg -3'
miRNA:   3'- aGGCCGuGGCCGUAAcggCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 119934 0.7 0.516482
Target:  5'- gUUGGCAgCGGCGcUGCUGCCG-GAg -3'
miRNA:   3'- aGGCCGUgGCCGUaACGGCGGCaCUg -5'
29082 5' -60.5 NC_006146.1 + 158090 0.69 0.545096
Target:  5'- -aUGcGCACCGGCA--GCCGCCGUc-- -3'
miRNA:   3'- agGC-CGUGGCCGUaaCGGCGGCAcug -5'
29082 5' -60.5 NC_006146.1 + 99055 0.69 0.574203
Target:  5'- cCCGGCGggugUCGGCggUGCCGuaGUGGu -3'
miRNA:   3'- aGGCCGU----GGCCGuaACGGCggCACUg -5'
29082 5' -60.5 NC_006146.1 + 4537 0.73 0.3611
Target:  5'- cUCGGUGCCGGCA--GCCGCCGa--- -3'
miRNA:   3'- aGGCCGUGGCCGUaaCGGCGGCacug -5'
29082 5' -60.5 NC_006146.1 + 168239 0.7 0.479318
Target:  5'- gCCGGCGCCuGCAggggggGCCGgCGgGGCg -3'
miRNA:   3'- aGGCCGUGGcCGUaa----CGGCgGCaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.