miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 132754 0.67 0.653039
Target:  5'- cUCCGGgGCCGGa--UGCCGCgGUcccGCa -3'
miRNA:   3'- -AGGCCgUGGCCguaACGGCGgCAc--UG- -5'
29082 5' -60.5 NC_006146.1 + 44695 0.67 0.702027
Target:  5'- gCCGGUguGgCGGCg--GUgGCCGUGGCc -3'
miRNA:   3'- aGGCCG--UgGCCGuaaCGgCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 109689 0.67 0.652052
Target:  5'- gUCCGGUACCcgaucggGGCAgagcuCCGCCaUGACc -3'
miRNA:   3'- -AGGCCGUGG-------CCGUaac--GGCGGcACUG- -5'
29082 5' -60.5 NC_006146.1 + 96027 0.68 0.613518
Target:  5'- aUCUGuGcCACCGGCAUggUGCCgGCCGUc-- -3'
miRNA:   3'- -AGGC-C-GUGGCCGUA--ACGG-CGGCAcug -5'
29082 5' -60.5 NC_006146.1 + 3121 0.69 0.583989
Target:  5'- aUCCGGCACCGuGCGUcucgagccaUGCgCGCCcacccGGCc -3'
miRNA:   3'- -AGGCCGUGGC-CGUA---------ACG-GCGGca---CUG- -5'
29082 5' -60.5 NC_006146.1 + 57369 0.69 0.535496
Target:  5'- --aGGCugCGGCggUGgCGCCGgugGGCu -3'
miRNA:   3'- aggCCGugGCCGuaACgGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 54016 0.7 0.525957
Target:  5'- gCCGGCACCaGGUGgcGCCuCCGgagGGCg -3'
miRNA:   3'- aGGCCGUGG-CCGUaaCGGcGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 169171 0.7 0.479318
Target:  5'- gCCGGCGCCuGCAggggggGCCGgCGgGGCg -3'
miRNA:   3'- aGGCCGUGGcCGUaa----CGGCgGCaCUG- -5'
29082 5' -60.5 NC_006146.1 + 55686 0.71 0.426183
Target:  5'- gCCaGCACgGGCAcgGCCGCCGccggggGGCu -3'
miRNA:   3'- aGGcCGUGgCCGUaaCGGCGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 127856 0.68 0.613518
Target:  5'- cUUgGGCAgCCGGCGUgccauaCCGCgCGUGAUa -3'
miRNA:   3'- -AGgCCGU-GGCCGUAac----GGCG-GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 39826 0.68 0.623396
Target:  5'- -aCGGC-CCGGCGgccucgGCCGCacaGUGGg -3'
miRNA:   3'- agGCCGuGGCCGUaa----CGGCGg--CACUg -5'
29082 5' -60.5 NC_006146.1 + 106478 0.68 0.613518
Target:  5'- cCUGGCAgCGuac--GCCGCCGUGGCc -3'
miRNA:   3'- aGGCCGUgGCcguaaCGGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 115215 0.67 0.662898
Target:  5'- cCCGGCGgCGGCcgUGCcCGUgcUGGCc -3'
miRNA:   3'- aGGCCGUgGCCGuaACG-GCGgcACUG- -5'
29082 5' -60.5 NC_006146.1 + 114232 0.67 0.662898
Target:  5'- cCCGGCGauCCGGCGUUGCagaCGgCGgcgaucGACg -3'
miRNA:   3'- aGGCCGU--GGCCGUAACG---GCgGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34559 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34466 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34373 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 23445 0.66 0.729875
Target:  5'- cUCCGGCugCccgucucGGCcuacgagGCCcugGCCGUGGCc -3'
miRNA:   3'- -AGGCCGugG-------CCGuaa----CGG---CGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 34280 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 7296 0.66 0.730825
Target:  5'- uUCCGGgGagaggccucaacUgGGCAUUGCCcauGCCaGUGACu -3'
miRNA:   3'- -AGGCCgU------------GgCCGUAACGG---CGG-CACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.