miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29082 5' -60.5 NC_006146.1 + 106478 0.68 0.613518
Target:  5'- cCUGGCAgCGuac--GCCGCCGUGGCc -3'
miRNA:   3'- aGGCCGUgGCcguaaCGGCGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 92154 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92184 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 34838 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 35023 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34745 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34652 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34559 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 34466 0.66 0.710728
Target:  5'- cCCGGCAgCGGCccgGCCaccccccGCCGgagcggGGCa -3'
miRNA:   3'- aGGCCGUgGCCGuaaCGG-------CGGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 92124 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92094 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92065 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 127856 0.68 0.613518
Target:  5'- cUUgGGCAgCCGGCGUgccauaCCGCgCGUGAUa -3'
miRNA:   3'- -AGgCCGU-GGCCGUAac----GGCG-GCACUG- -5'
29082 5' -60.5 NC_006146.1 + 39826 0.68 0.623396
Target:  5'- -aCGGC-CCGGCGgccucgGCCGCacaGUGGg -3'
miRNA:   3'- agGCCGuGGCCGUaa----CGGCGg--CACUg -5'
29082 5' -60.5 NC_006146.1 + 115215 0.67 0.662898
Target:  5'- cCCGGCGgCGGCcgUGCcCGUgcUGGCc -3'
miRNA:   3'- aGGCCGUgGCCGuaACG-GCGgcACUG- -5'
29082 5' -60.5 NC_006146.1 + 114232 0.67 0.662898
Target:  5'- cCCGGCGauCCGGCGUUGCagaCGgCGgcgaucGACg -3'
miRNA:   3'- aGGCCGU--GGCCGUAACG---GCgGCa-----CUG- -5'
29082 5' -60.5 NC_006146.1 + 165645 0.67 0.662898
Target:  5'- cCCGGCuCgGGCGUUGgguCCGUGACc -3'
miRNA:   3'- aGGCCGuGgCCGUAACggcGGCACUG- -5'
29082 5' -60.5 NC_006146.1 + 42707 0.67 0.672735
Target:  5'- cCCGGCGCCgcGGCGccccccuggGCCGCCucccGGCg -3'
miRNA:   3'- aGGCCGUGG--CCGUaa-------CGGCGGca--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92005 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5'
29082 5' -60.5 NC_006146.1 + 92035 0.67 0.672735
Target:  5'- cCCGGC-CUGGgGcUGCUGCUGgggGGCg -3'
miRNA:   3'- aGGCCGuGGCCgUaACGGCGGCa--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.