miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29083 3' -62.1 NC_006146.1 + 3384 0.67 0.611428
Target:  5'- ---cCGGGGgcgcggcccggcgccAGcCCUGCCCCCUcuccCCCg -3'
miRNA:   3'- aguaGCCCC---------------UCaGGACGGGGGAc---GGG- -5'
29083 3' -62.1 NC_006146.1 + 589 0.67 0.611428
Target:  5'- ---cCGGGGgcgcggcccggcgccAGcCCUGCCCCCUcuccCCCg -3'
miRNA:   3'- aguaGCCCC---------------UCaGGACGGGGGAc---GGG- -5'
29083 3' -62.1 NC_006146.1 + 1520 0.67 0.611428
Target:  5'- ---cCGGGGgcgcggcccggcgccAGcCCUGCCCCCUcuccCCCg -3'
miRNA:   3'- aguaGCCCC---------------UCaGGACGGGGGAc---GGG- -5'
29083 3' -62.1 NC_006146.1 + 17846 0.67 0.607543
Target:  5'- ----gGGGGAccaCUGCCCCCUgguauaaagugGCCCa -3'
miRNA:   3'- aguagCCCCUcagGACGGGGGA-----------CGGG- -5'
29083 3' -62.1 NC_006146.1 + 24001 0.67 0.607543
Target:  5'- ----gGGGGAccaCUGCCCCCUgguauaaagugGCCCa -3'
miRNA:   3'- aguagCCCCUcagGACGGGGGA-----------CGGG- -5'
29083 3' -62.1 NC_006146.1 + 20924 0.67 0.607543
Target:  5'- ----gGGGGAccaCUGCCCCCUgguauaaagugGCCCa -3'
miRNA:   3'- aguagCCCCUcagGACGGGGGA-----------CGGG- -5'
29083 3' -62.1 NC_006146.1 + 27079 0.67 0.607543
Target:  5'- ----gGGGGAccaCUGCCCCCUgguauaaagugGCCCa -3'
miRNA:   3'- aguagCCCCUcagGACGGGGGA-----------CGGG- -5'
29083 3' -62.1 NC_006146.1 + 14768 0.67 0.607543
Target:  5'- ----gGGGGAccaCUGCCCCCUgguauaaagugGCCCa -3'
miRNA:   3'- aguagCCCCUcagGACGGGGGA-----------CGGG- -5'
29083 3' -62.1 NC_006146.1 + 154886 0.67 0.606572
Target:  5'- cCGUCGGGGGGcagggCCUcGCCCgggcugaccgcguCC-GCCCu -3'
miRNA:   3'- aGUAGCCCCUCa----GGA-CGGG-------------GGaCGGG- -5'
29083 3' -62.1 NC_006146.1 + 402 0.67 0.597843
Target:  5'- gCcgCGcgcuGGGGGUCCggggaaGCCCCCcGCUCg -3'
miRNA:   3'- aGuaGC----CCCUCAGGa-----CGGGGGaCGGG- -5'
29083 3' -62.1 NC_006146.1 + 116236 0.67 0.597843
Target:  5'- cCGUCuGGGAgGUCUacgacgggGCCCCUccaaUGCCCg -3'
miRNA:   3'- aGUAGcCCCU-CAGGa-------CGGGGG----ACGGG- -5'
29083 3' -62.1 NC_006146.1 + 2650 0.67 0.588166
Target:  5'- aCggCGGGGAccaUCCaGCCCaaCUGCCCu -3'
miRNA:   3'- aGuaGCCCCUc--AGGaCGGGg-GACGGG- -5'
29083 3' -62.1 NC_006146.1 + 34170 0.68 0.578518
Target:  5'- ---gUGGGGGGUgC-GCCCCCaGCCg -3'
miRNA:   3'- aguaGCCCCUCAgGaCGGGGGaCGGg -5'
29083 3' -62.1 NC_006146.1 + 128009 0.68 0.568905
Target:  5'- gUCuUUGGGGAGgaCgUGCCCCCcuucGCCUc -3'
miRNA:   3'- -AGuAGCCCCUCa-GgACGGGGGa---CGGG- -5'
29083 3' -62.1 NC_006146.1 + 146609 0.68 0.568905
Target:  5'- ----aGGGGAaacagcGUCCaGCCCCCgGCCa -3'
miRNA:   3'- aguagCCCCU------CAGGaCGGGGGaCGGg -5'
29083 3' -62.1 NC_006146.1 + 32808 0.68 0.568905
Target:  5'- --cUCGGGGGGUgCacaaCCCCCagccgGCCCg -3'
miRNA:   3'- aguAGCCCCUCAgGac--GGGGGa----CGGG- -5'
29083 3' -62.1 NC_006146.1 + 136638 0.68 0.568905
Target:  5'- --cUCGGGGGGUgCacaaCCCCCagccgGCCCg -3'
miRNA:   3'- aguAGCCCCUCAgGac--GGGGGa----CGGG- -5'
29083 3' -62.1 NC_006146.1 + 135317 0.68 0.567945
Target:  5'- cCggCGGGGGGUggccgggccgcugCCggGUCCgCUGCCCg -3'
miRNA:   3'- aGuaGCCCCUCA-------------GGa-CGGGgGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 135967 0.68 0.567945
Target:  5'- cCggCGGGGGGUggccgggccgcugCCggGUCCgCUGCCCg -3'
miRNA:   3'- aGuaGCCCCUCA-------------GGa-CGGGgGACGGG- -5'
29083 3' -62.1 NC_006146.1 + 136060 0.68 0.567945
Target:  5'- cCggCGGGGGGUggccgggccgcugCCggGUCCgCUGCCCg -3'
miRNA:   3'- aGuaGCCCCUCA-------------GGa-CGGGgGACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.