Results 21 - 40 of 331 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29083 | 5' | -51.3 | NC_006146.1 | + | 49758 | 0.66 | 0.994113 |
Target: 5'- cGCGCgGCCcAGGcCcAGACG-CCGGCUg -3' miRNA: 3'- -CGUG-UGGuUCCuGuUCUGUaGGUCGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 168715 | 0.66 | 0.994113 |
Target: 5'- cGCGgACCAugucgAGGGuCuGGcCAUCCAGUCu -3' miRNA: 3'- -CGUgUGGU-----UCCU-GuUCuGUAGGUCGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 137024 | 0.66 | 0.994113 |
Target: 5'- gGCACACCccGGGGAgGAGGCcgggugggGGCCu -3' miRNA: 3'- -CGUGUGG--UUCCUgUUCUGuagg----UCGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 109193 | 0.66 | 0.994113 |
Target: 5'- ---gGCCGGGGGCAuguaGGGCAUCagAGCg -3' miRNA: 3'- cgugUGGUUCCUGU----UCUGUAGg-UCGg -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 102742 | 0.66 | 0.994027 |
Target: 5'- uGCGCcugcCCGGGGAgGAGGCAgccccuuUCCuGCg -3' miRNA: 3'- -CGUGu---GGUUCCUgUUCUGU-------AGGuCGg -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 77326 | 0.66 | 0.994027 |
Target: 5'- cGCAUGCCcaggcugauggugAAGGACGAGg---CCGGCUu -3' miRNA: 3'- -CGUGUGG-------------UUCCUGUUCuguaGGUCGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 160338 | 0.66 | 0.99385 |
Target: 5'- gGCugGCCAcgguccaugucacgGGGAacuGGCGUCuCAGCg -3' miRNA: 3'- -CGugUGGU--------------UCCUguuCUGUAG-GUCGg -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 5090 | 0.66 | 0.993578 |
Target: 5'- aCGCgGCCAGGGACGccccccuagCCGGCCg -3' miRNA: 3'- cGUG-UGGUUCCUGUucugua---GGUCGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 96079 | 0.66 | 0.993578 |
Target: 5'- uGCACACCAggauuaagagccugcGGGAgCGcuGCGUCU-GCCg -3' miRNA: 3'- -CGUGUGGU---------------UCCU-GUucUGUAGGuCGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 43494 | 0.66 | 0.9932 |
Target: 5'- -gACACCGgcuccGGcGGCGGGGC--CCAGCCc -3' miRNA: 3'- cgUGUGGU-----UC-CUGUUCUGuaGGUCGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 15021 | 0.66 | 0.9932 |
Target: 5'- uGUuuGCCAGGGA-GGGGCGcCUGGCCa -3' miRNA: 3'- -CGugUGGUUCCUgUUCUGUaGGUCGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 54605 | 0.66 | 0.9932 |
Target: 5'- -aGgACCGcgGGGGCGc--CAUCCGGCCg -3' miRNA: 3'- cgUgUGGU--UCCUGUucuGUAGGUCGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 41083 | 0.66 | 0.9932 |
Target: 5'- -gAgGCCAGGGACAgcgaggggagccAGGCGUgCAggGCCu -3' miRNA: 3'- cgUgUGGUUCCUGU------------UCUGUAgGU--CGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 129586 | 0.66 | 0.9932 |
Target: 5'- gGCGCGaaaCAGGGA-GGGACG-CCAuGCCu -3' miRNA: 3'- -CGUGUg--GUUCCUgUUCUGUaGGU-CGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 155334 | 0.66 | 0.9932 |
Target: 5'- cGCGCcuguccucCCAGGGACccGAGACGaaggCCcGCCu -3' miRNA: 3'- -CGUGu-------GGUUCCUG--UUCUGUa---GGuCGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 123021 | 0.66 | 0.9932 |
Target: 5'- gGCGC-CCAAGGAacc--CGUCCAcgGCCu -3' miRNA: 3'- -CGUGuGGUUCCUguucuGUAGGU--CGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 14782 | 0.66 | 0.9932 |
Target: 5'- gGCACcuguuggcgGCUGAGGGgAAGGagaggCCGGCCg -3' miRNA: 3'- -CGUG---------UGGUUCCUgUUCUgua--GGUCGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 44986 | 0.66 | 0.9932 |
Target: 5'- cGUGCGCCGAcGGAgGcgcAGAC-UCCAcgaGCCg -3' miRNA: 3'- -CGUGUGGUU-CCUgU---UCUGuAGGU---CGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 170693 | 0.66 | 0.993102 |
Target: 5'- aGCACuaACgGAGGcugaaaaGCAGGAagcggcaauUCCAGCCa -3' miRNA: 3'- -CGUG--UGgUUCC-------UGUUCUgu-------AGGUCGG- -5' |
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29083 | 5' | -51.3 | NC_006146.1 | + | 47368 | 0.66 | 0.992599 |
Target: 5'- gGC-CACCGucaAGGGCAugAGguccuacggguuggaGCGUCUGGCCg -3' miRNA: 3'- -CGuGUGGU---UCCUGU--UC---------------UGUAGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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