miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29084 3' -50.2 NC_006146.1 + 111813 0.66 0.996047
Target:  5'- uGACGGAGAGGCgaggGAGGCCcagcaAGAGc -3'
miRNA:   3'- -UUGCUUUUCCGg---UUCCGGaaac-UCUC- -5'
29084 3' -50.2 NC_006146.1 + 70015 0.66 0.996047
Target:  5'- -cCGAGAcccAGGCCGacAGGUCcgUGAGAc -3'
miRNA:   3'- uuGCUUU---UCCGGU--UCCGGaaACUCUc -5'
29084 3' -50.2 NC_006146.1 + 23133 0.66 0.996047
Target:  5'- --gGGAGAGGCCGGGaGCCUggGcuucgcuugcacAGAGu -3'
miRNA:   3'- uugCUUUUCCGGUUC-CGGAaaC------------UCUC- -5'
29084 3' -50.2 NC_006146.1 + 76488 0.66 0.996047
Target:  5'- --aGGAAAGGCCAuacucuuguAGGUUaUUGAGAu -3'
miRNA:   3'- uugCUUUUCCGGU---------UCCGGaAACUCUc -5'
29084 3' -50.2 NC_006146.1 + 168933 0.66 0.995784
Target:  5'- aGACGAGGGGGCCcguggacAGGCCgaguucugaucGGGGGu -3'
miRNA:   3'- -UUGCUUUUCCGGu------UCCGGaaa--------CUCUC- -5'
29084 3' -50.2 NC_006146.1 + 154645 0.66 0.995647
Target:  5'- gAGCGAGGccgggcaggccgggcAGGCCGggucuuGGGCCU--GGGAGu -3'
miRNA:   3'- -UUGCUUU---------------UCCGGU------UCCGGAaaCUCUC- -5'
29084 3' -50.2 NC_006146.1 + 99817 0.66 0.995362
Target:  5'- cGGCGAGGGGGUguuCGGGGCCUcgGuGGAa -3'
miRNA:   3'- -UUGCUUUUCCG---GUUCCGGAaaC-UCUc -5'
29084 3' -50.2 NC_006146.1 + 108966 0.66 0.995362
Target:  5'- -uUGAucaccGGGCCcgugAAGGCCUcgGAGGGa -3'
miRNA:   3'- uuGCUuu---UCCGG----UUCCGGAaaCUCUC- -5'
29084 3' -50.2 NC_006146.1 + 15295 0.66 0.995362
Target:  5'- gAGCGAGGGGGaggaGGGGCCg--GAGGc -3'
miRNA:   3'- -UUGCUUUUCCgg--UUCCGGaaaCUCUc -5'
29084 3' -50.2 NC_006146.1 + 107754 0.66 0.995362
Target:  5'- cACGAGAAuGGUCGAGGCg---GAGAu -3'
miRNA:   3'- uUGCUUUU-CCGGUUCCGgaaaCUCUc -5'
29084 3' -50.2 NC_006146.1 + 17595 0.66 0.995362
Target:  5'- gGGCGAccuGGCCcGGGCCUggUGccuGGAGc -3'
miRNA:   3'- -UUGCUuuuCCGGuUCCGGAa-AC---UCUC- -5'
29084 3' -50.2 NC_006146.1 + 94696 0.66 0.995289
Target:  5'- cGGCGAGagcucGAGGCCGuacucgaGGGUCUUcaUGAGGu -3'
miRNA:   3'- -UUGCUU-----UUCCGGU-------UCCGGAA--ACUCUc -5'
29084 3' -50.2 NC_006146.1 + 45036 0.66 0.994584
Target:  5'- uGAgGGAgaGAGGCCGGGGCCggcucccuAGGGg -3'
miRNA:   3'- -UUgCUU--UUCCGGUUCCGGaaac----UCUC- -5'
29084 3' -50.2 NC_006146.1 + 89780 0.66 0.994584
Target:  5'- gGACG-AGGGGCCcauGGCCgugGAcGAGg -3'
miRNA:   3'- -UUGCuUUUCCGGuu-CCGGaaaCU-CUC- -5'
29084 3' -50.2 NC_006146.1 + 41155 0.66 0.994584
Target:  5'- gGACGAGGAcuGGUCGGGGUCg--GAGGc -3'
miRNA:   3'- -UUGCUUUU--CCGGUUCCGGaaaCUCUc -5'
29084 3' -50.2 NC_006146.1 + 57836 0.66 0.994584
Target:  5'- uGAUGAguuGAAGGUCAAGGCCaacgUGGaccccGAGg -3'
miRNA:   3'- -UUGCU---UUUCCGGUUCCGGaa--ACU-----CUC- -5'
29084 3' -50.2 NC_006146.1 + 14204 0.66 0.9945
Target:  5'- gGACGggGAGGCgGuggcgcgcaacgcGGGCCUUcUGGccGAGu -3'
miRNA:   3'- -UUGCuuUUCCGgU-------------UCCGGAA-ACU--CUC- -5'
29084 3' -50.2 NC_006146.1 + 44502 0.66 0.993703
Target:  5'- cGCGGAGAGGgCGcagAGGCCccuggUGGGAu -3'
miRNA:   3'- uUGCUUUUCCgGU---UCCGGaa---ACUCUc -5'
29084 3' -50.2 NC_006146.1 + 117976 0.66 0.993703
Target:  5'- cGGCGGAcGAGGCCAGcGCCcccGGGGGg -3'
miRNA:   3'- -UUGCUU-UUCCGGUUcCGGaaaCUCUC- -5'
29084 3' -50.2 NC_006146.1 + 13332 0.66 0.993703
Target:  5'- gGugGAGucGGCCGcGGCCUacgcGGAGg -3'
miRNA:   3'- -UugCUUuuCCGGUuCCGGAaac-UCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.