miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29084 5' -58.2 NC_006146.1 + 75800 0.66 0.867826
Target:  5'- gGgCGUCucggGCGCCGCCuucgaGGCC-CUgCGGg -3'
miRNA:   3'- aCgGCAGu---UGUGGCGG-----UCGGaGA-GCC- -5'
29084 5' -58.2 NC_006146.1 + 86052 0.66 0.867826
Target:  5'- -uCCGUCGGCuCCuCCAGCUUCU-GGa -3'
miRNA:   3'- acGGCAGUUGuGGcGGUCGGAGAgCC- -5'
29084 5' -58.2 NC_006146.1 + 127200 0.66 0.867826
Target:  5'- cGCCaggaccUgGACGCCGUaguGGCCUuCUCGGa -3'
miRNA:   3'- aCGGc-----AgUUGUGGCGg--UCGGA-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 52552 0.66 0.867826
Target:  5'- cGCCGagcgguagauguUCAcGCGcCCGCCGGCC-CUCa- -3'
miRNA:   3'- aCGGC------------AGU-UGU-GGCGGUCGGaGAGcc -5'
29084 5' -58.2 NC_006146.1 + 33108 0.66 0.867826
Target:  5'- aGCCGg-GugGCCGCCGGCgggUUCgcCGGg -3'
miRNA:   3'- aCGGCagUugUGGCGGUCG---GAGa-GCC- -5'
29084 5' -58.2 NC_006146.1 + 91832 0.66 0.860485
Target:  5'- aGCCGUCAucGCAUgCGuCCGgcGCCUgcggaCUCGGa -3'
miRNA:   3'- aCGGCAGU--UGUG-GC-GGU--CGGA-----GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 58888 0.66 0.860485
Target:  5'- aGCCGUCuuCGCUGaCUGGucucCCUCUCuGGa -3'
miRNA:   3'- aCGGCAGuuGUGGC-GGUC----GGAGAG-CC- -5'
29084 5' -58.2 NC_006146.1 + 113825 0.66 0.860485
Target:  5'- cGCCGcUCGuggacuACGCCGUCuuCCUCcCGGg -3'
miRNA:   3'- aCGGC-AGU------UGUGGCGGucGGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 81757 0.66 0.860485
Target:  5'- cUGCgCGUugcaugagagCAugGCCGcCCGGUCUC-CGGg -3'
miRNA:   3'- -ACG-GCA----------GUugUGGC-GGUCGGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 127622 0.66 0.85974
Target:  5'- -cCUGggCGGCACCGCCGgcccgcuGCCUCUUGu -3'
miRNA:   3'- acGGCa-GUUGUGGCGGU-------CGGAGAGCc -5'
29084 5' -58.2 NC_006146.1 + 23737 0.66 0.852948
Target:  5'- cGCCgGUCuGCGCCGCCGccgggucaacuGCCg--CGGc -3'
miRNA:   3'- aCGG-CAGuUGUGGCGGU-----------CGGagaGCC- -5'
29084 5' -58.2 NC_006146.1 + 42437 0.66 0.852948
Target:  5'- aGCUGggugcGCGCCGCCAGCauggCGGc -3'
miRNA:   3'- aCGGCagu--UGUGGCGGUCGgagaGCC- -5'
29084 5' -58.2 NC_006146.1 + 47532 0.66 0.852948
Target:  5'- gUGUCGggGGCGCCGCCucGGuCCUCcucgCGGc -3'
miRNA:   3'- -ACGGCagUUGUGGCGG--UC-GGAGa---GCC- -5'
29084 5' -58.2 NC_006146.1 + 43424 0.66 0.846003
Target:  5'- cGCCGUCuccucguccaucaguAGCcugcggGCCGCCacaucuggagcggcAGCCUcCUCGGc -3'
miRNA:   3'- aCGGCAG---------------UUG------UGGCGG--------------UCGGA-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 119301 0.66 0.845222
Target:  5'- gGCUGUCccGACGCaaCCGGCCUCaguccccccuUCGGc -3'
miRNA:   3'- aCGGCAG--UUGUGgcGGUCGGAG----------AGCC- -5'
29084 5' -58.2 NC_006146.1 + 106490 0.66 0.845222
Target:  5'- cGCCGcCGugGCC-CCGGCCUacaUCa- -3'
miRNA:   3'- aCGGCaGUugUGGcGGUCGGAg--AGcc -5'
29084 5' -58.2 NC_006146.1 + 166825 0.66 0.845222
Target:  5'- gUGCUGUCGACGCgGCCcgGGUC-CgcgUGGa -3'
miRNA:   3'- -ACGGCAGUUGUGgCGG--UCGGaGa--GCC- -5'
29084 5' -58.2 NC_006146.1 + 164852 0.66 0.837313
Target:  5'- -uCCGUUAcCACCGUCAGUUgCUUGGa -3'
miRNA:   3'- acGGCAGUuGUGGCGGUCGGaGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 50853 0.66 0.837313
Target:  5'- cGCag-CAGCGCCaCCAGUCUCcgcgCGGg -3'
miRNA:   3'- aCGgcaGUUGUGGcGGUCGGAGa---GCC- -5'
29084 5' -58.2 NC_006146.1 + 76473 0.67 0.832482
Target:  5'- uUGCCcaguacaagacccugGUCGGC-CUGCCaAGCCUCaCGGc -3'
miRNA:   3'- -ACGG---------------CAGUUGuGGCGG-UCGGAGaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.